Alessandro Orro

Alessandro Orro

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Alessandro Orro

Alessandro Orro

Publications by authors named "Alessandro Orro"

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25Publications

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Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7.

BMC Genomics 2018 Aug 6;19(1):587. Epub 2018 Aug 6.

Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126, Milan, Italy.

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http://dx.doi.org/10.1186/s12864-018-4965-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080516PMC
August 2018

Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7.

Res Microbiol 2016 Nov - Dec;167(9-10):766-773. Epub 2016 Jul 7.

Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.resmic.2016.06.008DOI Listing
March 2017

Removing duplicate reads using graphics processing units.

BMC Bioinformatics 2016 Nov 8;17(Suppl 12):346. Epub 2016 Nov 8.

Institute for Biomedical Technologies, National Research Council, Via Fratelli Cervi, 93, Segrate (Mi), 20090, Italy.

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http://dx.doi.org/10.1186/s12859-016-1192-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123249PMC
November 2016

Further Insights in the Binding Mode of Selective Inhibitors to Human PDE4D Enzyme Combining Docking and Molecular Dynamics.

Mol Inform 2016 09 20;35(8-9):369-81. Epub 2016 Jun 20.

Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy.

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http://dx.doi.org/10.1002/minf.201501033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094559PMC
September 2016

Exome sequencing identifies variants in two genes encoding the LIM-proteins NRAP and FHL1 in an Italian patient with BAG3 myofibrillar myopathy.

J Muscle Res Cell Motil 2016 06 21;37(3):101-15. Epub 2016 Jul 21.

Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Centro Dino Ferrari, via F. Sforza, 35, 20122, Milan, Italy.

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http://dx.doi.org/10.1007/s10974-016-9451-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010835PMC
June 2016

Molecular dynamics and docking simulation of a natural variant of Activated Protein C with impaired protease activity: implications for integrin-mediated antiseptic function.

J Biomol Struct Dyn 2015 20;33(1):85-92. Epub 2013 Nov 20.

a Istituto di Tecnologie Biomediche, Consiglio Nazionale delle Ricerche , 20090 Segrate , Italy.

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http://dx.doi.org/10.1080/07391102.2013.851033DOI Listing
January 2016

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.

Front Bioeng Biotechnol 2015 10;3:28. Epub 2015 Mar 10.

Institute for Biomedical Technologies, National Research Council , Milan , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354384PMC
March 2015

GPU-BSM: a GPU-based tool to map bisulfite-treated reads.

PLoS One 2014 19;9(5):e97277. Epub 2014 May 19.

Institute for Biomedical Technologies, National Research Council, Segrate (Mi), Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097277PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4026317PMC
December 2014

Homology modeling, docking studies and molecular dynamic simulations using graphical processing unit architecture to probe the type-11 phosphodiesterase catalytic site: a computational approach for the rational design of selective inhibitors.

Chem Biol Drug Des 2013 Dec 26;82(6):718-31. Epub 2013 Aug 26.

Dipartimento di Farmacia, Sezione di Chimica del Farmaco e del Prodotto Cosmetico, Università degli Studi di Genova, Viale Benedetto XV 3, 16132, Genova, Italy.

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http://dx.doi.org/10.1111/cbdd.12193DOI Listing
December 2013

A parallel protein surface reconstruction system.

Int J Bioinform Res Appl 2008 ;4(3):221-39

Institute for Biomedical Technologies, National Research Council, Segrate Milan, Italy.

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http://dx.doi.org/10.1504/IJBRA.2008.019572DOI Listing
October 2008

SNPLims: a data management system for genome wide association studies.

BMC Bioinformatics 2008 Mar 26;9 Suppl 2:S13. Epub 2008 Mar 26.

Consorzio Interuniversitario Lombardo per l'Elaborazione Automatica, Via Sanzio Raffaello 4, 20090 Segrate (MI), Italy.

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http://dx.doi.org/10.1186/1471-2105-9-S2-S13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323662PMC
March 2008

BGBlast: a BLAST grid implementation with database self-updating and adaptive replication.

Stud Health Technol Inform 2007 ;126:23-30

Institute for Biomedical Technologies - National Research Council, via Fratelli Cervi 93, 20090 Segrate (MI), Italy.

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September 2007

An agent approach for protein function analysis in a grid infrastructure.

Stud Health Technol Inform 2007 ;126:314-21

Institute for Biomedical Technologies - Italian National Research Council, Via Fratelli Cervi 93, I-20090 Segrate (MI) - Italy.

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September 2007

A hybrid genetic-neural system for predicting protein secondary structure.

BMC Bioinformatics 2005 Dec 1;6 Suppl 4:S3. Epub 2005 Dec 1.

Dept. of Electrical and Electronic Engineering, University of Cagliari Piazza d'Armi, I-09123 Cagliari, Italy.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-6-S4-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866382PMC
December 2005

Multiple alignment through protein secondary-structure information.

IEEE Trans Nanobioscience 2005 Sep;4(3):207-11

Department of Electrical and Electronic Engineering, University of Cagliari, Cagliari I-09123, Italy.

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September 2005