Publications by authors named "Alena Shkumatava"

24Publications

lncRNAs in development and differentiation: from sequence motifs to functional characterization.

Authors:
Florian Constanty Alena Shkumatava

Development 2021 Jan 13;148(1). Epub 2021 Jan 13.

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, Paris 75005, France

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January 2021

SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.

Authors:
Ansgar Zoch Tania Auchynnikava Rebecca V Berrens Yuka Kabayama Theresa Schöpp Madeleine Heep Lina Vasiliauskaitė Yuvia A Pérez-Rico Atlanta G Cook Alena Shkumatava Juri Rappsilber Robin C Allshire Dónal O'Carroll

Nature 2020 08 16;584(7822):635-639. Epub 2020 Jul 16.

Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

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August 2020

Author Correction: In-cell identification and measurement of RNA-protein interactions.

Authors:
Antoine Graindorge Inês Pinheiro Anna Nawrocka Allison C Mallory Peter Tsvetkov Noa Gil Carlo Carolis Frank Buchholz Igor Ulitsky Edith Heard Mikko Taipale Alena Shkumatava

Nat Commun 2020 07 8;11(1):3498. Epub 2020 Jul 8.

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, Paris, 75005, France.

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July 2020

Demarcation of Topologically Associating Domains Is Uncoupled from Enriched CTCF Binding in Developing Zebrafish.

Authors:
Yuvia A Pérez-Rico Emmanuel Barillot Alena Shkumatava

iScience 2020 May 10;23(5):101046. Epub 2020 Apr 10.

Institut Curie PSL Research University, INSERM U934, CNRS UMR 3215 75005, Paris, France. Electronic address:

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May 2020

Corrigendum: Strategies for genetic inactivation of long noncoding RNAs in zebrafish.

Authors:
Perrine Lavalou Helene Eckert Louise Damy Florian Constanty Sara Majello Angelo Bitetti Antoine Graindorge Alena Shkumatava

RNA 2020 Apr;26(4):529

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April 2020

In-Cell Discovery of RNA-Protein Interactions.

Authors:
Xavier Sabaté-Cadenas Alena Shkumatava

Trends Biochem Sci 2020 Mar 14;45(3):272-273. Epub 2020 Jan 14.

Institut Curie, Paris Sciences et Lettres (PSL) Research University, Institut National de la Santé et de la Recherche Médicale (INSERM) Unité 934, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche 3215, 75005 Paris, France. Electronic address:

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March 2020

In-cell identification and measurement of RNA-protein interactions.

Authors:
Antoine Graindorge Inês Pinheiro Anna Nawrocka Allison C Mallory Peter Tsvetkov Noa Gil Carlo Carolis Frank Buchholz Igor Ulitsky Edith Heard Mikko Taipale Alena Shkumatava

Nat Commun 2019 11 22;10(1):5317. Epub 2019 Nov 22.

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, Paris, 75005, France.

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November 2019

Strategies for genetic inactivation of long noncoding RNAs in zebrafish.

Authors:
Perrine Lavalou Helene Eckert Louise Damy Florian Constanty Sara Majello Angelo Bitetti Antoine Graindorge Alena Shkumatava

RNA 2019 08 1;25(8):897-904. Epub 2019 May 1.

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, 75005 Paris, France.

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August 2019

MicroRNA degradation by a conserved target RNA regulates animal behavior.

Authors:
Angelo Bitetti Allison C Mallory Elisabetta Golini Claudia Carrieri Héctor Carreño Gutiérrez Emerald Perlas Yuvia A Pérez-Rico Glauco P Tocchini-Valentini Anton J Enright William H J Norton Silvia Mandillo Dónal O'Carroll Alena Shkumatava

Nat Struct Mol Biol 2018 03 26;25(3):244-251. Epub 2018 Feb 26.

Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934, Paris, France.

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March 2018

Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution.

Authors:
Matthew P Davis Claudia Carrieri Harpreet K Saini Stijn van Dongen Tommaso Leonardi Giovanni Bussotti Jack M Monahan Tania Auchynnikava Angelo Bitetti Juri Rappsilber Robin C Allshire Alena Shkumatava Dónal O'Carroll Anton J Enright

EMBO Rep 2017 07 12;18(7):1231-1247. Epub 2017 May 12.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK

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July 2017

Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes.

Authors:
Yuvia A Pérez-Rico Valentina Boeva Allison C Mallory Angelo Bitetti Sara Majello Emmanuel Barillot Alena Shkumatava

Genome Res 2017 02 13;27(2):259-268. Epub 2016 Dec 13.

Institut Curie, PSL Research University, INSERM U934, CNRS UMR 3215, F-75005, Paris, France.

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February 2017

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.

Authors:
Maximilian Haeussler Kai Schönig Hélène Eckert Alexis Eschstruth Joffrey Mianné Jean-Baptiste Renaud Sylvie Schneider-Maunoury Alena Shkumatava Lydia Teboul Jim Kent Jean-Stephane Joly Jean-Paul Concordet

Genome Biol 2016 07 5;17(1):148. Epub 2016 Jul 5.

INSERM U1154, CNRS UMR 7196, Muséum National d'Histoire Naturelle, Paris, France.

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July 2016

LncRNAs in vertebrates: advances and challenges.

Authors:
Allison C Mallory Alena Shkumatava

Biochimie 2015 Oct 24;117:3-14. Epub 2015 Mar 24.

Institut Curie, 26 Rue d'Ulm, 75248 Paris Cedex 05, France; CNRS UMR3215, 75248 Paris Cedex 05, France; INSERM U934, 75248 Paris Cedex 05, France. Electronic address:

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October 2015

Extensive alternative polyadenylation during zebrafish development.

Authors:
Igor Ulitsky Alena Shkumatava Calvin H Jan Alexander O Subtelny David Koppstein George W Bell Hazel Sive David P Bartel

Genome Res 2012 Oct 21;22(10):2054-66. Epub 2012 Jun 21.

Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, USA.

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October 2012

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.

Authors:
Igor Ulitsky Alena Shkumatava Calvin H Jan Hazel Sive David P Bartel

Cell 2011 Dec;147(7):1537-50

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.

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December 2011

Expanding the microRNA targeting code: functional sites with centered pairing.

Authors:
Chanseok Shin Jin-Wu Nam Kyle Kai-How Farh H Rosaria Chiang Alena Shkumatava David P Bartel

Mol Cell 2010 Jun;38(6):789-802

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.

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June 2010

Coherent but overlapping expression of microRNAs and their targets during vertebrate development.

Authors:
Alena Shkumatava Alexander Stark Hazel Sive David P Bartel

Genes Dev 2009 Feb;23(4):466-81

Whitehead Institute of Biomedical Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 01142, USA.

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February 2009

Histone deacetylase 1 is required for cell cycle exit and differentiation in the zebrafish retina.

Authors:
Jochen A Stadler Alena Shkumatava William H J Norton Marlene J Rau Robert Geisler Sabine Fischer Carl J Neumann

Dev Dyn 2005 Jul;233(3):883-9

European Molecular Biology Laboratory, Heidelberg, Germany.

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July 2005

Shh directs cell-cycle exit by activating p57Kip2 in the zebrafish retina.

Authors:
Alena Shkumatava Carl J Neumann

EMBO Rep 2005 Jun;6(6):563-9

EMBL Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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June 2005

The role of hedgehog signaling in the development of the zebrafish visual system.

Authors:
Jochen A Stadler Alena Shkumatava Carl J Neumann

Dev Neurosci 2004 ;26(5-6):346-51

EMBL, Developmental Biology Programme, Meyerhofstrasse 1, DE-69117 Heidelberg, Germany.

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July 2005