Aleksey A Penin

Aleksey A Penin

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Aleksey A Penin

Aleksey A Penin

Publications by authors named "Aleksey A Penin"

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36Publications

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Gene Expression Maps in Plants: Current State and Prospects.

Plants (Basel) 2019 Aug 28;8(9). Epub 2019 Aug 28.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow 127051, Russia.

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http://dx.doi.org/10.3390/plants8090309DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6784182PMC
August 2019

Coding palindromes in mitochondrial genes of Nematomorpha.

Nucleic Acids Res 2019 07;47(13):6858-6870

Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskiye Gory 1-40, Moscow 119991, Russian Federation.

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http://dx.doi.org/10.1093/nar/gkz517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6649704PMC
July 2019

An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana.

BMC Plant Biol 2019 Feb 15;19(Suppl 1):49. Epub 2019 Feb 15.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Bolshoy Karetny per. 19, build.1, Moscow, 127051, Russia.

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http://dx.doi.org/10.1186/s12870-019-1636-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393959PMC
February 2019

Comparative Analysis of Developmental Transcriptome Maps of Arabidopsis thaliana and Solanum lycopersicum.

Genes (Basel) 2019 01 15;10(1). Epub 2019 Jan 15.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Bolshoy Karetny per. 19, build. 1, 127051 Moscow, Russia.

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http://dx.doi.org/10.3390/genes10010050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6356586PMC
January 2019

RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants.

BMC Genomics 2018 Aug 9;19(1):602. Epub 2018 Aug 9.

Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.1186/s12864-018-4968-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085651PMC
August 2018

High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution.

Plant J 2017 Jul 12;91(2):278-291. Epub 2017 Jun 12.

A. N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.

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http://dx.doi.org/10.1111/tpj.13563DOI Listing
July 2017

Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals.

PLoS One 2016 18;11(10):e0165072. Epub 2016 Oct 18.

Belozersky Institute for Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 1, build. 40, Moscow 119991, Russian Federation.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0165072PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068742PMC
May 2017

Effect of method of deduplication on estimation of differential gene expression using RNA-seq.

PeerJ 2017 16;5:e3091. Epub 2017 Mar 16.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.7717/peerj.3091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357343PMC
March 2017

A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling.

Plant J 2016 12 19;88(6):1058-1070. Epub 2016 Nov 19.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, 127051, Russia.

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http://dx.doi.org/10.1111/tpj.13312DOI Listing
December 2016

The Genome of Intoshia linei Affirms Orthonectids as Highly Simplified Spiralians.

Curr Biol 2016 07 30;26(13):1768-1774. Epub 2016 Jun 30.

Belozersky Institute for Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119991, Russian Federation; Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, Russian Federation. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2016.05.007DOI Listing
July 2016

Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives.

Sci Rep 2016 07 25;6:30042. Epub 2016 Jul 25.

Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.1038/srep30042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4958920PMC
July 2016

Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus.

Parasitol Int 2016 Feb 9;65(1):12-19. Epub 2015 Sep 9.

Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk 630090, Russia.

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http://dx.doi.org/10.1016/j.parint.2015.09.002DOI Listing
February 2016

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

Mol Biol Evol 2015 Oct 10;32(10):2775-83. Epub 2015 Jul 10.

School of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia Department of Ecology and Evolutionary Biology, University of Michigan

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http://dx.doi.org/10.1093/molbev/msv153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576712PMC
October 2015

RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation.

BMC Genomics 2015 Jun 18;16:466. Epub 2015 Jun 18.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, 127051, Russia.

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http://dx.doi.org/10.1186/s12864-015-1688-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470339PMC
June 2015

Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus.

PLoS Genet 2014 Oct 9;10(10):e1004696. Epub 2014 Oct 9.

Laboratory of Molecular genetics, Russian Institute of Fisheries and Oceanology, Russian Federal Research Institute of Fisheries and Oceanography, Moscow, Russia; N. K. Koltsov Institute of Developmental Biology RAS, Moscow, Russia.

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http://dx.doi.org/10.1371/journal.pgen.1004696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191950PMC
October 2014

The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes.

Epigenetics 2014 Jul 15;9(7):951-63. Epub 2014 Apr 15.

Institute of Gene Biology; Russian Academy of Sciences; Moscow, Russia; Department of Molecular Biology; Lomonosov Moscow State University; Moscow, Russia; LIA 1066 French-Russian Joint Cancer Research Laboratory; Villejuif, France and Moscow, Russia.

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http://dx.doi.org/10.4161/epi.28794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143410PMC
July 2014

Paratrypanosoma is a novel early-branching trypanosomatid.

Curr Biol 2013 Sep 5;23(18):1787-93. Epub 2013 Sep 5.

Institute of Parasitology, Biology Centre, 37005 České Budějovice (Budweis), Czech Republic.

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http://dx.doi.org/10.1016/j.cub.2013.07.045DOI Listing
September 2013

Comparative analysis of gene expression level by quantitative real-time PCR has limited application in objects with different morphology.

PLoS One 2012 30;7(5):e38161. Epub 2012 May 30.

Department of Genetics, Biological faculty, M.V. [corrected] Lomonosov Moscow State University, Moscow, Russia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0038161PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3364230PMC
October 2012

Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis.

Genome Biol Evol 2011 4;3:1296-303. Epub 2011 Oct 4.

Department of Evolutionary Biochemistry, A. N. Belozersky Institute of Physico-Chemical Biology, M. V. Lomonosov Moscow State University, Russia.

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http://dx.doi.org/10.1093/gbe/evr102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228488PMC
March 2012

Correlation between number and position of floral organs in Arabidopsis.

Ann Bot 2011 Jul;108(1):123-31

Department of Genetics, Biological Faculty, Moscow State University, Leninskiye gory, Moscow, 119992, Russia.

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http://dx.doi.org/10.1093/aob/mcr115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3119622PMC
July 2011

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).

BMC Genomics 2011 Jan 13;12:30. Epub 2011 Jan 13.

Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico-Chemical Biology, MV Lomonosov Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1186/1471-2164-12-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3027159PMC
January 2011

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.

BMC Plant Biol 2008 May 20;8:59. Epub 2008 May 20.

Faculty of Bioengineering and Bioinformatics, M,V, Lomonosov Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1186/1471-2229-8-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2430205PMC
May 2008