Alejandro Sanchez-Gracia

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

Authors:

Claude Rispe Fabrice Legeai Paul D Nabity Rosa Fernández Arinder K Arora Patrice Baa-Puyoulet Celeste R Banfill Leticia Bao Miquel Barberà Maryem Bouallègue Anthony Bretaudeau Jennifer A Brisson Federica Calevro Pierre Capy Olivier Catrice Thomas Chertemps Carole Couture Laurent Delière Angela E Douglas Keith Dufault-Thompson Paula Escuer Honglin Feng Astrid Forneck Toni Gabaldón Roderic Guigó Frédérique Hilliou Silvia Hinojosa-Alvarez Yi-Min Hsiao Sylvie Hudaverdian Emmanuelle Jacquin-Joly Edward B James Spencer Johnston Benjamin Joubard Gaëlle Le Goff Gaël Le Trionnaire Pablo Librado Shanlin Liu Eric Lombaert Hsiao-Ling Lu Martine Maïbèche Mohamed Makni Marina Marcet-Houben David Martínez-Torres Camille Meslin Nicolas Montagné Nancy A Moran Daciana Papura Nicolas Parisot Yvan Rahbé Mélanie Ribeiro Lopes Aida Ripoll-Cladellas Stéphanie Robin Céline Roques Pascale Roux Julio Rozas Alejandro Sánchez-Gracia Jose F Sánchez-Herrero Didac Santesmasses Iris Scatoni Rémy-Félix Serre Ming Tang Wenhua Tian Paul A Umina Manuella van Munster Carole Vincent-Monégat Joshua Wemmer Alex C C Wilson Ying Zhang Chaoyang Zhao Jing Zhao Serena Zhao Xin Zhou François Delmotte Denis Tagu

BMC Biol 2020 Sep 11;18(1):123. Epub 2020 Sep 11.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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September 2020

Genome mining and sequence analysis of chemosensory soluble proteins in arthropods.

Authors:

Joel Vizueta Paula Escuer Alejandro Sánchez-Gracia Julio Rozas

Methods Enzymol 2020 19;642:1-20. Epub 2020 Jun 19.

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain. Electronic address:

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June 2020

Evolutionary History of Major Chemosensory Gene Families across Panarthropoda.

Authors:

Joel Vizueta Paula Escuer Cristina Frías-López Sara Guirao-Rico Lars Hering Georg Mayer Julio Rozas Alejandro Sánchez-Gracia

Mol Biol Evol 2020 12;37(12):3601-3615

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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December 2020

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

Authors:

Claude Rispe Fabrice Legeai Paul D Nabity Rosa Fernández Arinder K Arora Patrice Baa-Puyoulet Celeste R Banfill Leticia Bao Miquel Barberà Maryem Bouallègue Anthony Bretaudeau Jennifer A Brisson Federica Calevro Pierre Capy Olivier Catrice Thomas Chertemps Carole Couture Laurent Delière Angela E Douglas Keith Dufault-Thompson Paula Escuer Honglin Feng Astrid Forneck Toni Gabaldón Roderic Guigó Frédérique Hilliou Silvia Hinojosa-Alvarez Yi-Min Hsiao Sylvie Hudaverdian Emmanuelle Jacquin-Joly Edward B James Spencer Johnston Benjamin Joubard Gaëlle Le Goff Gaël Le Trionnaire Pablo Librado Shanlin Liu Eric Lombaert Hsiao-Ling Lu Martine Maïbèche Mohamed Makni Marina Marcet-Houben David Martínez-Torres Camille Meslin Nicolas Montagné Nancy A Moran Daciana Papura Nicolas Parisot Yvan Rahbé Mélanie Ribeiro Lopes Aida Ripoll-Cladellas Stéphanie Robin Céline Roques Pascale Roux Julio Rozas Alejandro Sánchez-Gracia Jose F Sánchez-Herrero Didac Santesmasses Iris Scatoni Rémy-Félix Serre Ming Tang Wenhua Tian Paul A Umina Manuella van Munster Carole Vincent-Monégat Joshua Wemmer Alex C C Wilson Ying Zhang Chaoyang Zhao Jing Zhao Serena Zhao Xin Zhou François Delmotte Denis Tagu

BMC Biol 2020 07 23;18(1):90. Epub 2020 Jul 23.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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July 2020

bitacora: A comprehensive tool for the identification and annotation of gene families in genome assemblies.

Authors:

Joel Vizueta Alejandro Sánchez-Gracia Julio Rozas

Mol Ecol Resour 2020 Sep 23;20(5):1445-1452. Epub 2020 Jun 23.

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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September 2020

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings.

Nat Commun 2020 05 26;11(1):2631. Epub 2020 May 26.

GEM-DMC2 Unit, The CABD (CSIC-UPO-JA), Ctra. de Utrera km 1, 41013, Seville, Spain.

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May 2020

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses.

Mol Biol Evol 2020 09;37(9):2661-2678

The European Drosophila Population Genomics Consortium (DrosEU).

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September 2020

Understanding the Early Evolutionary Stages of a Tandem Drosophilamelanogaster-Specific Gene Family: A Structural and Functional Population Study.

Authors:

Bryan D Clifton Jamie Jimenez Ashlyn Kimura Zeinab Chahine Pablo Librado Alejandro Sánchez-Gracia Mashya Abbassi Francisco Carranza Carolus Chan Marcella Marchetti Wanting Zhang Mijuan Shi Christine Vu Shudan Yeh Laura Fanti Xiao-Qin Xia Julio Rozas José M Ranz

Mol Biol Evol 2020 09;37(9):2584-2600

Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA.

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September 2020

The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates.

Authors:

Jose Francisco Sánchez-Herrero Cristina Frías-López Paula Escuer Silvia Hinojosa-Alvarez Miquel A Arnedo Alejandro Sánchez-Gracia Julio Rozas

Gigascience 2019 08;8(8)

Departament de Genètica, Microbiologia i Estadística, Universitat de Barcelona (UB) and Institut de Recerca de la Biodiversitat (IRBio), Diagonal 643, 08028 Barcelona, Spain.

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August 2019

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation.

Proc Natl Acad Sci U S A 2019 08 6;116(34):17081-17089. Epub 2019 Aug 6.

Unidad de Genomica Avanzada/Langebio, Centro de Investigación y de Estudios Avanzados, Irapuato 36821, México;

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August 2019

Chance and predictability in evolution: The genomic basis of convergent dietary specializations in an adaptive radiation.

Authors:

Joel Vizueta Nuria Macías-Hernández Miquel A Arnedo Julio Rozas Alejandro Sánchez-Gracia

Mol Ecol 2019 09 19;28(17):4028-4045. Epub 2019 Aug 19.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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September 2019

Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability.

Authors:

Laia Leria Miquel Vila-Farré Marta Álvarez-Presas Alejandro Sánchez-Gracia Julio Rozas Ronald Sluys Marta Riutort

Mol Phylogenet Evol 2020 02 28;143:106496. Epub 2019 May 28.

Dpt. de Genètica, Microbiologia i Estadística, Facultat de Biologia, and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Catalonia, Spain. Electronic address:

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February 2020

Legacies of domestication, trade and herder mobility shape extant male zebu cattle diversity in South Asia and Africa.

Authors:

Lucía Pérez-Pardal Alejandro Sánchez-Gracia Isabel Álvarez Amadou Traoré J Bento S Ferraz Iván Fernández Vânia Costa Shanyuan Chen Miika Tapio Rodolfo J C Cantet Ajita Patel Richard H Meadow Fiona B Marshall Albano Beja-Pereira Félix Goyache

Sci Rep 2018 12 21;8(1):18027. Epub 2018 Dec 21.

Servicio Regional de Investigación y Desarrollo Agroalimentario, E-33394, Gijón, Spain.

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December 2018

Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates.

Authors:

Joel Vizueta Julio Rozas Alejandro Sánchez-Gracia

Genome Biol Evol 2018 04;10(5):1221-1236

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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April 2018

Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes.

Authors:

Alejandro Sánchez-Gracia Sara Guirao-Rico Silvia Hinojosa-Alvarez Julio Rozas

J Neurogenet 2017 12 23;31(4):307-319. Epub 2017 Nov 23.

a Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Facultat de Biologia , Universitat de Barcelona , Barcelona , Spain.

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December 2017

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

Authors:

Julio Rozas Albert Ferrer-Mata Juan Carlos Sánchez-DelBarrio Sara Guirao-Rico Pablo Librado Sebastián E Ramos-Onsins Alejandro Sánchez-Gracia

Mol Biol Evol 2017 Dec;34(12):3299-3302

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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December 2017

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

Nat Ecol Evol 2017 Feb 6;1(3):59. Epub 2017 Feb 6.

National Institute for Basic Biology, Okazaki 444-8585, Japan.

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February 2017

Sequence diversity patterns suggesting balancing selection in partially sex-linked genes of the plant Silene latifolia are not generated by demographic history or gene flow.

Authors:

Sara Guirao-Rico Alejandro Sánchez-Gracia Deborah Charlesworth

Mol Ecol 2017 Mar 27;26(5):1357-1370. Epub 2017 Jan 27.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JN, UK.

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March 2017

Evolution of Chemosensory Gene Families in Arthropods: Insight from the First Inclusive Comparative Transcriptome Analysis across Spider Appendages.

Authors:

Joel Vizueta Cristina Frías-López Nuria Macías-Hernández Miquel A Arnedo Alejandro Sánchez-Gracia Julio Rozas

Genome Biol Evol 2017 01;9(1):178-196

Departament de Genètica, Microbiologia i Estadística and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Spain.

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January 2017

DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms.

Authors:

Cristina Frías-López José F Sánchez-Herrero Sara Guirao-Rico Elisa Mora Miquel A Arnedo Alejandro Sánchez-Gracia Julio Rozas

Bioinformatics 2016 12 16;32(24):3753-3759. Epub 2016 Aug 16.

Departament de Genètica, Microbiologia i Estadística, and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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December 2016

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

Authors:

Michael R Kanost Estela L Arrese Xiaolong Cao Yun-Ru Chen Sanjay Chellapilla Marian R Goldsmith Ewald Grosse-Wilde David G Heckel Nicolae Herndon Haobo Jiang Alexie Papanicolaou Jiaxin Qu Jose L Soulages Heiko Vogel James Walters Robert M Waterhouse Seung-Joon Ahn Francisca C Almeida Chunju An Peshtewani Aqrawi Anne Bretschneider William B Bryant Sascha Bucks Hsu Chao Germain Chevignon Jayne M Christen David F Clarke Neal T Dittmer Laura C F Ferguson Spyridoula Garavelou Karl H J Gordon Ramesh T Gunaratna Yi Han Frank Hauser Yan He Hanna Heidel-Fischer Ariana Hirsh Yingxia Hu Hongbo Jiang Divya Kalra Christian Klinner Christopher König Christie Kovar Ashley R Kroll Suyog S Kuwar Sandy L Lee Rüdiger Lehman Kai Li Zhaofei Li Hanquan Liang Shanna Lovelace Zhiqiang Lu Jennifer H Mansfield Kyle J McCulloch Tittu Mathew Brian Morton Donna M Muzny David Neunemann Fiona Ongeri Yannick Pauchet Ling-Ling Pu Ioannis Pyrousis Xiang-Jun Rao Amanda Redding Charles Roesel Alejandro Sanchez-Gracia Sarah Schaack Aditi Shukla Guillaume Tetreau Yang Wang Guang-Hua Xiong Walther Traut Tom K Walsh Kim C Worley Di Wu Wenbi Wu Yuan-Qing Wu Xiufeng Zhang Zhen Zou Hannah Zucker Adriana D Briscoe Thorsten Burmester Rollie J Clem René Feyereisen Cornelis J P Grimmelikhuijzen Stavros J Hamodrakas Bill S Hansson Elisabeth Huguet Lars S Jermiin Que Lan Herman K Lehman Marce Lorenzen Hans Merzendorfer Ioannis Michalopoulos David B Morton Subbaratnam Muthukrishnan John G Oakeshott Will Palmer Yoonseong Park A Lorena Passarelli Julio Rozas Lawrence M Schwartz Wendy Smith Agnes Southgate Andreas Vilcinskas Richard Vogt Ping Wang John Werren Xiao-Qiang Yu Jing-Jiang Zhou Susan J Brown Steven E Scherer Stephen Richards Gary W Blissard

Insect Biochem Mol Biol 2016 09 12;76:118-147. Epub 2016 Aug 12.

Boyce Thompson Institute at Cornell University, Tower Road, Ithaca, NY, 14853, USA.

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September 2016

Imprints of multiple glacial refugia in the Pyrenees revealed by phylogeography and palaeodistribution modelling of an endemic spider.

Authors:

Leticia Bidegaray-Batista Alejandro Sánchez-Gracia Giulia Santulli Luigi Maiorano Antoine Guisan Alfried P Vogler Miquel A Arnedo

Mol Ecol 2016 May 28;25(9):2046-64. Epub 2016 Mar 28.

Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain.

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May 2016

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

Authors:

Monika Gulia-Nuss Andrew B Nuss Jason M Meyer Daniel E Sonenshine R Michael Roe Robert M Waterhouse David B Sattelle José de la Fuente Jose M Ribeiro Karine Megy Jyothi Thimmapuram Jason R Miller Brian P Walenz Sergey Koren Jessica B Hostetler Mathangi Thiagarajan Vinita S Joardar Linda I Hannick Shelby Bidwell Martin P Hammond Sarah Young Qiandong Zeng Jenica L Abrudan Francisca C Almeida Nieves Ayllón Ketaki Bhide Brooke W Bissinger Elena Bonzon-Kulichenko Steven D Buckingham Daniel R Caffrey Melissa J Caimano Vincent Croset Timothy Driscoll Don Gilbert Joseph J Gillespie Gloria I Giraldo-Calderón Jeffrey M Grabowski David Jiang Sayed M S Khalil Donghun Kim Katherine M Kocan Juraj Koči Richard J Kuhn Timothy J Kurtti Kristin Lees Emma G Lang Ryan C Kennedy Hyeogsun Kwon Rushika Perera Yumin Qi Justin D Radolf Joyce M Sakamoto Alejandro Sánchez-Gracia Maiara S Severo Neal Silverman Ladislav Šimo Marta Tojo Cristian Tornador Janice P Van Zee Jesús Vázquez Filipe G Vieira Margarita Villar Adam R Wespiser Yunlong Yang Jiwei Zhu Peter Arensburger Patricia V Pietrantonio Stephen C Barker Renfu Shao Evgeny M Zdobnov Frank Hauser Cornelis J P Grimmelikhuijzen Yoonseong Park Julio Rozas Richard Benton Joao H F Pedra David R Nelson Maria F Unger Jose M C Tubio Zhijian Tu Hugh M Robertson Martin Shumway Granger Sutton Jennifer R Wortman Daniel Lawson Stephen K Wikel Vishvanath M Nene Claire M Fraser Frank H Collins Bruce Birren Karen E Nelson Elisabet Caler Catherine A Hill

Nat Commun 2016 Feb 9;7:10507. Epub 2016 Feb 9.

Department of Entomology, Purdue University, West Lafayette, Indiana 47907, USA.

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February 2016

Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae).

Authors:

Cristina Frías-López Francisca C Almeida Sara Guirao-Rico Joel Vizueta Alejandro Sánchez-Gracia Miquel A Arnedo Julio Rozas

PeerJ 2015 30;3:e1064. Epub 2015 Jun 30.

Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona , Barcelona , Spain.

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July 2015

Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers.

Authors:

Ignacio Blanco Karoline Kuchenbaecker Daniel Cuadras Xianshu Wang Daniel Barrowdale Gorka Ruiz de Garibay Pablo Librado Alejandro Sánchez-Gracia Julio Rozas Núria Bonifaci Lesley McGuffog Vernon S Pankratz Abul Islam Francesca Mateo Antoni Berenguer Anna Petit Isabel Català Joan Brunet Lidia Feliubadaló Eva Tornero Javier Benítez Ana Osorio Teresa Ramón y Cajal Heli Nevanlinna Kristiina Aittomäki Banu K Arun Amanda E Toland Beth Y Karlan Christine Walsh Jenny Lester Mark H Greene Phuong L Mai Robert L Nussbaum Irene L Andrulis Susan M Domchek Katherine L Nathanson Timothy R Rebbeck Rosa B Barkardottir Anna Jakubowska Jan Lubinski Katarzyna Durda Katarzyna Jaworska-Bieniek Kathleen Claes Tom Van Maerken Orland Díez Thomas V Hansen Lars Jønson Anne-Marie Gerdes Bent Ejlertsen Miguel de la Hoya Trinidad Caldés Alison M Dunning Clare Oliver Elena Fineberg Margaret Cook Susan Peock Emma McCann Alex Murray Chris Jacobs Gabriella Pichert Fiona Lalloo Carol Chu Huw Dorkins Joan Paterson Kai-Ren Ong Manuel R Teixeira Frans B L Hogervorst Annemarie H van der Hout Caroline Seynaeve Rob B van der Luijt Marjolijn J L Ligtenberg Peter Devilee Juul T Wijnen Matti A Rookus Hanne E J Meijers-Heijboer Marinus J Blok Ans M W van den Ouweland Cora M Aalfs Gustavo C Rodriguez Kelly-Anne A Phillips Marion Piedmonte Stacy R Nerenstone Victoria L Bae-Jump David M O'Malley Elena S Ratner Rita K Schmutzler Barbara Wappenschmidt Kerstin Rhiem Christoph Engel Alfons Meindl Nina Ditsch Norbert Arnold Hansjoerg J Plendl Dieter Niederacher Christian Sutter Shan Wang-Gohrke Doris Steinemann Sabine Preisler-Adams Karin Kast Raymonda Varon-Mateeva Andrea Gehrig Anders Bojesen Inge Sokilde Pedersen Lone Sunde Uffe Birk Jensen Mads Thomassen Torben A Kruse Lenka Foretova Paolo Peterlongo Loris Bernard Bernard Peissel Giulietta Scuvera Siranoush Manoukian Paolo Radice Laura Ottini Marco Montagna Simona Agata Christine Maugard Jacques Simard Penny Soucy Andreas Berger Anneliese Fink-Retter Christian F Singer Christine Rappaport Daphne Geschwantler-Kaulich Muy-Kheng Tea Georg Pfeiler Esther M John Alex Miron Susan L Neuhausen Mary Beth Terry Wendy K Chung Mary B Daly David E Goldgar Ramunas Janavicius Cecilia M Dorfling Elisabeth J van Rensburg Florentia Fostira Irene Konstantopoulou Judy Garber Andrew K Godwin Edith Olah Steven A Narod Gad Rennert Shani Shimon Paluch Yael Laitman Eitan Friedman Annelie Liljegren Johanna Rantala Marie Stenmark-Askmalm Niklas Loman Evgeny N Imyanitov Ute Hamann Amanda B Spurdle Sue Healey Jeffrey N Weitzel Josef Herzog David Margileth Chiara Gorrini Manel Esteller Antonio Gómez Sergi Sayols Enrique Vidal Holger Heyn Dominique Stoppa-Lyonnet Melanie Léoné Laure Barjhoux Marion Fassy-Colcombet Antoine de Pauw Christine Lasset Sandra Fert Ferrer Laurent Castera Pascaline Berthet François Cornelis Yves-Jean Bignon Francesca Damiola Sylvie Mazoyer Olga M Sinilnikova Christopher A Maxwell Joseph Vijai Mark Robson Noah Kauff Marina J Corines Danylko Villano Julie Cunningham Adam Lee Noralane Lindor Conxi Lázaro Douglas F Easton Kenneth Offit Georgia Chenevix-Trench Fergus J Couch Antonis C Antoniou Miguel Angel Pujana

PLoS One 2015 1;10(4):e0120020. Epub 2015 Apr 1.

Breast Cancer and Systems Biology Unit, Catalan Institute of Oncology (ICO), Bellvitge Institute for Biomedical Research (IDIBELL), L'Hospitalet del Llobregat, Catalonia, Spain.

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December 2015