Alberto Riva

Alberto Riva

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Alberto Riva

Alberto Riva

Publications by authors named "Alberto Riva"

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Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions.

Nat Commun 2019 Sep 26;10(1):4374. Epub 2019 Sep 26.

Department of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA.

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http://dx.doi.org/10.1038/s41467-019-12355-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6763448PMC
September 2019

Can Clinical and Surgical Parameters Be Combined to Predict How Long It Will Take a Tibia Fracture to Heal? A Prospective Multicentre Observational Study: The FRACTING Study.

Biomed Res Int 2018 30;2018:1809091. Epub 2018 Apr 30.

Research and Development, IGEA Clinical Biophysics, Carpi, Modena, Italy.

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http://dx.doi.org/10.1155/2018/1809091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952440PMC
October 2018

Mechanism Sharing Between Genetic and Gestational Hypoxia-Induced Cardiac Anomalies.

Front Cardiovasc Med 2018 13;5:100. Epub 2018 Aug 13.

Department of Physiology and Functional Genomics, College of Medicine, University of Florida, Gainesville, FL, United States.

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https://www.frontiersin.org/article/10.3389/fcvm.2018.00100/
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http://dx.doi.org/10.3389/fcvm.2018.00100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099185PMC
August 2018

SIRT1/HERC4 Locus Associated With Bisphosphonate-Induced Osteonecrosis of the Jaw: An Exome-Wide Association Analysis.

J Bone Miner Res 2018 01 16;33(1):91-98. Epub 2017 Oct 16.

Department of Pharmacotherapy and Translational Research and Center for Pharmacogenomics, College of Pharmacy, University of Florida, Gainesville, FL, USA.

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http://doi.wiley.com/10.1002/jbmr.3285
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http://dx.doi.org/10.1002/jbmr.3285DOI Listing
January 2018

UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition.

Cell Rep 2017 Oct;21(3):628-640

Division of Hematology/Oncology, Robert H. Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Division of Hematology/Oncology, University of Florida Health Cancer Center, Gainesville, FL 2033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.09.078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5706555PMC
October 2017

DNA Methylation of Synaptic Genes in the Prefrontal Cortex Is Associated with Aging and Age-Related Cognitive Impairment.

Front Aging Neurosci 2017 2;9:249. Epub 2017 Aug 2.

Department of Neuroscience, McKnight Brain Institute, University of Florida, GainesvilleFL, United States.

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http://dx.doi.org/10.3389/fnagi.2017.00249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539085PMC
August 2017

Dissecting Low Atmospheric Pressure Stress: Transcriptome Responses to the Components of Hypobaria in Arabidopsis.

Front Plant Sci 2017 10;8:528. Epub 2017 Apr 10.

Department of Horticultural Sciences, Program in Plant Molecular and Cellular Biology, University of FloridaGainesville, FL, USA.

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http://dx.doi.org/10.3389/fpls.2017.00528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385376PMC
April 2017

The Biological Metallic versus Metallic Solution in Treating Periprosthetic Femoral Fractures: Outcome Assessment.

Adv Med 2016 20;2016:2918735. Epub 2016 Nov 20.

Department of Medical and Surgical Sciences and Neuroscience, Section of Orthopedics and Traumatology, University of Siena, University Hospital "Santa Maria alle Scotte", Siena, Italy.

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http://dx.doi.org/10.1155/2016/2918735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5136380PMC
November 2016

Clinical Effects of Driver Somatic Mutations on the Outcomes of Patients With Myelodysplastic Syndromes Treated With Allogeneic Hematopoietic Stem-Cell Transplantation.

J Clin Oncol 2016 Oct;34(30):3627-3637

Matteo G. Della Porta, Anna Gallì, Silvia Zibellini, Ettore Rizzo, Marianna Rossi, Marta Ubezio, Virginia V. Ferretti, Silvia Catricalà, Chiara Milanesi, Emilio P. Alessandrino, and Mario Cazzola, Fondazione IRCCS Policlinico, San Matteo; Matteo G. Della Porta, Alberto Malovini, Ivan Limongelli, Riccardo Bellazzi, and Mario Cazzola, University of Pavia, Pavia; Andrea Bacigalupo, Maria Teresa van Lint, Sarah Pozzi, and Silvia Luchetti, San Martino Hospital, Genova; Massimo Bernardi, Cristina Tresoldi, and Fabio Ciceri, San Raffaele Scientific Institute; Paola Marenco and Laura Pezzetti, Ospedale Niguarda Ca' Granda, Milan; Bernardino Allione and Benedetto Bruno, University of Torino, Torino; Pietro Pioltelli, Ospedale San Gerardo, Monza; Alberto Bosi, Azienda Ospedaliera Universitaria Careggi, Florence; Maria Teresa Voso and Simona Sica, Catholic University of the Sacred Heart, Rome; Mariella Cuzzola, Azienda Ospedaliera Bianchi Melacrino Morelli, Reggio Calabria; Emanuele Angelucci, Ospedale Oncologico di Riferimento Regionale A. Businco, Cagliari; Orietta Spinelli and Alessandro Rambaldi, Azienda Ospedaliera Papa Giovanni XXIII, Bergamo; Francesca Bonifazi, University of Bologna, Bologna; Armando Santoro, Humanitas University, Rozzano, Italy; Alberto Riva, University of Florida, Gainesville, FL; and Elli Papaemmanuil, Memorial Sloan-Kettering Cancer Center, New York, NY.

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http://dx.doi.org/10.1200/JCO.2016.67.3616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6366344PMC
October 2016

BigQ: a NoSQL based framework to handle genomic variants in i2b2.

BMC Bioinformatics 2015 Dec 29;16:415. Epub 2015 Dec 29.

Dipartimento di Ingegneria Industriale e dell'Informazione and Center for Health Technologies, Università di Pavia, Pavia, Italy.

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http://dx.doi.org/10.1186/s12859-015-0861-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696314PMC
December 2015

Influence of the Prader-Willi syndrome imprinting center on the DNA methylation landscape in the mouse brain.

Epigenetics 2014 Nov;9(11):1540-56

a Department of Biochemistry and Molecular Biology ; University of Florida ; Gainesville , FL USA.

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http://dx.doi.org/10.4161/15592294.2014.969667DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4623435PMC
November 2014

Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma.

Genome Res 2014 Feb 8;24(2):329-39. Epub 2013 Oct 8.

Department of Biochemistry and Molecular Biology, University of Florida Health Cancer Center, University of Florida College of Medicine, Gainesville, Florida 32610, USA;

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http://dx.doi.org/10.1101/gr.161737.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912423PMC
February 2014

A knowledge-based method for association studies on complex diseases.

PLoS One 2012 6;7(9):e44162. Epub 2012 Sep 6.

Department of Molecular Genetics and Microbiology and UF Genetics Institute, University of Florida, Gainesville, Florida, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0044162PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435396PMC
May 2013

PASTA: splice junction identification from RNA-sequencing data.

BMC Bioinformatics 2013 Apr 4;14:116. Epub 2013 Apr 4.

Department of Molecular Genetics and Microbiology, College of Medicine, University of Florida, Gainesville, FL, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-14-116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3623791PMC
April 2013

DNA methyltransferase accessibility protocol for individual templates by deep sequencing.

Methods Enzymol 2012 ;513:185-204

Department of Biochemistry and Molecular Biology, University of Florida Shands Cancer Center Program in Cancer Genetics, Epigenetics, and Tumor Virology, Gainesville, Florida, USA.

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http://dx.doi.org/10.1016/B978-0-12-391938-0.00008-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697432PMC
December 2012

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER.

Authors:
Alberto Riva

BMC Genomics 2012 Jun 18;13 Suppl 4:S7. Epub 2012 Jun 18.

Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32610, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-S4-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303742PMC
June 2012

The MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sites.

Authors:
Alberto Riva

Nucleic Acids Res 2012 Jan 24;40(Database issue):D155-61. Epub 2011 Nov 24.

Department of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, FL 32610, USA.

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http://dx.doi.org/10.1093/nar/gkr1080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245066PMC
January 2012

New version of solid telescope.

Authors:
Alberto Riva

Appl Opt 2011 Jul;50(21):4148-60

Istituto Nazionale di Astrofisica, Osservatorio Astronomico di Torino, Via Osservatorio, 20, I-10025 Pino Torinese (TO), Italy.

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http://dx.doi.org/10.1364/AO.50.004148DOI Listing
July 2011

Painful hip arthroplasty: definition.

Clin Cases Miner Bone Metab 2011 May;8(2):19-22

Orthopaedics and Traumatology Clinic, University Hospital of Siena, Siena, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3279074PMC
May 2011

An automated reasoning framework for translational research.

J Biomed Inform 2010 Jun 18;43(3):419-27. Epub 2009 Nov 18.

Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153204640900151
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http://dx.doi.org/10.1016/j.jbi.2009.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878845PMC
June 2010

Phenotypic and genotypic data integration and exploration through a web-service architecture.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:S5. Epub 2009 Oct 15.

Department of Computer Engineering and Systems Science, University of Pavia, Via Ferrata 1, Pavia, Italy.

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http://www.biomedcentral.com/1471-2105/10/S12/S5
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http://dx.doi.org/10.1186/1471-2105-10-S12-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762070PMC
October 2009

A unique, consistent identifier for alternatively spliced transcript variants.

PLoS One 2009 Oct 28;4(10):e7631. Epub 2009 Oct 28.

Department of Molecular Genetics and Microbiology and University of Florida Genetics Institute, University of Florida, Gainesville, Florida, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007631PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765725PMC
October 2009

Genephony: a knowledge management tool for genome-wide research.

BMC Bioinformatics 2009 Sep 3;10:278. Epub 2009 Sep 3.

Centre for Tissue Engineering, University of Pavia, Pavia, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744709PMC
September 2009

Distantly sampled soils carry few species in common.

ISME J 2008 Sep 5;2(9):901-10. Epub 2008 Jun 5.

Department of Physical and Environmental Sciences, University of Toronto at Scarborough, Ontario, Canada.

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http://dx.doi.org/10.1038/ismej.2008.55DOI Listing
September 2008

Kaposi's sarcoma-associated herpesvirus encodes an ortholog of miR-155.

J Virol 2007 Dec 19;81(23):12836-45. Epub 2007 Sep 19.

Department of Molecular Genetics and Microbiology, and Shands Cancer Center, 1376 Mowry Road, Gainesville, FL 32610-3633, USA.

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http://dx.doi.org/10.1128/JVI.01804-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2169101PMC
December 2007

Pyrosequencing enumerates and contrasts soil microbial diversity.

ISME J 2007 Aug 5;1(4):283-90. Epub 2007 Jul 5.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611-0700, USA.

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http://dx.doi.org/10.1038/ismej.2007.53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970868PMC
August 2007

Identification of cellular genes targeted by KSHV-encoded microRNAs.

PLoS Pathog 2007 May;3(5):e65

Department of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, Florida, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.0030065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1876501PMC
May 2007

START: an automated tool for serial analysis of chromatin occupancy data.

Bioinformatics 2006 Apr 24;22(8):999-1001. Epub 2006 Feb 24.

Children's Hospital Informatics Program at the Harvard-MIT Division of Health Sciences and Technology, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl062DOI Listing
April 2006

GR and HMGB1 interact only within chromatin and influence each other's residence time.

Mol Cell 2005 Apr;18(1):109-21

San Raffaele Research Institute, Via Olgettina 58, 20132 Milan, Italy.

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http://dx.doi.org/10.1016/j.molcel.2005.03.005DOI Listing
April 2005

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

BMC Bioinformatics 2005 Mar 30;6:79. Epub 2005 Mar 30.

Children's Hospital Boston, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-6-79DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1131891PMC
March 2005

The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.

Nucleic Acids Res 2005 Jan;33(Database issue):D91-7

Children's Hospital Informatics Program, Children's Hospital Boston, Harvard Medical School, Enders Research Building EN-150.9, 300 Longwood Avenue, Boston, MA 02115, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gki103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540057PMC
January 2005

Bayesian approach to discovering pathogenic SNPs in conserved protein domains.

Hum Mutat 2004 Aug;24(2):178-84

Children's Hospital Boston, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/humu.20063DOI Listing
August 2004

A SNP-centric database for the investigation of the human genome.

BMC Bioinformatics 2004 Mar 26;5:33. Epub 2004 Mar 26.

Children's Hospital Informatics Program, Children's Hospital Boston, 320 Longwood, Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1186/1471-2105-5-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC395999PMC
March 2004

Accessing genomic data through XML-based remote procedure calls.

Proc AMIA Symp 2002 :662-6

Children's Hospital, Informatics Program, Boston, MA 02115, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244329PMC
April 2003

Basic Science in Medical Reasoning: An Artificial Intelligence Approach.

Adv Health Sci Educ Theory Pract 1997 ;2(2):131-140

Knowledge Media Institute, The Open University, Milton Keynes, United Kingdom MK7 6AA, e-mail:

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http://dx.doi.org/10.1023/A:1009732313526DOI Listing
January 1997