Alberto Rastrojo

Alberto Rastrojo

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Alberto Rastrojo

Alberto Rastrojo

Publications by authors named "Alberto Rastrojo"

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Analysis by RNA-seq of transcriptomic changes elicited by heat shock in Leishmania major.

Sci Rep 2019 May 6;9(1):6919. Epub 2019 May 6.

Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM), Campus de Excelencia Internacional (CEI) UAM+CSIC, Universidad Autónoma de Madrid, Madrid, Spain.

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http://dx.doi.org/10.1038/s41598-019-43354-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6502937PMC
May 2019

Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation.

Sci Rep 2019 Apr 16;9(1):6127. Epub 2019 Apr 16.

Centro de Biología Molecular "Severo Ochoa" (CSIC/UAM), Campus de Excelencia Internacional (CEI) UAM+CSIC, Universidad Autónoma de Madrid, Madrid, Spain.

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http://dx.doi.org/10.1038/s41598-019-42511-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467909PMC
April 2019

Complete and de novo assembly of the Leishmania braziliensis (M2904) genome.

Mem Inst Oswaldo Cruz 2018 12 10;114:e180438. Epub 2018 Dec 10.

Universidad Autónoma de Madrid, Centro de Biología Molecular Severo Ochoa, Madrid, Spain.

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http://dx.doi.org/10.1590/0074-02760180438DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6319030PMC
December 2018

Viruses in Polar Lake and Soil Ecosystems.

Adv Virus Res 2018 26;101:39-54. Epub 2018 Apr 26.

Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid), Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/bs.aivir.2018.02.002DOI Listing
November 2018

Genomic assemblies of newly sequenced Trypanosoma cruzi strains reveal new genomic expansion and greater complexity.

Sci Rep 2018 Oct 2;8(1):14631. Epub 2018 Oct 2.

Centro de Biología Molecular Severo Ochoa, Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain.

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http://www.nature.com/articles/s41598-018-32877-2
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http://dx.doi.org/10.1038/s41598-018-32877-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6168536PMC
October 2018

A New Putative Caulimoviridae Genus Discovered through Air Metagenomics.

Microbiol Resour Announc 2018 Oct 11;7(14). Epub 2018 Oct 11.

Centro de Biología Molecular Severo Ochoa, Consejo Superior de Investigaciones Científicas and Universidad Autónoma de Madrid (CSIC-UAM), Madrid, Spain.

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http://genomea.asm.org/lookup/doi/10.1128/MRA.00955-18
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http://dx.doi.org/10.1128/MRA.00955-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256638PMC
October 2018

Complete Genome Sequence of Herpes Simplex Virus 2 Strain 333.

Microbiol Resour Announc 2018 Sep 6;7(9). Epub 2018 Sep 6.

Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Científicas and Universidad Autónoma de Madrid), Madrid, Spain.

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http://dx.doi.org/10.1128/MRA.00870-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256523PMC
September 2018

Genomic and transcriptomic alterations in Leishmania donovani lines experimentally resistant to antileishmanial drugs.

Int J Parasitol Drugs Drug Resist 2018 08 13;8(2):246-264. Epub 2018 Apr 13.

Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.ijpddr.2018.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039315PMC
August 2018

Resequencing of the Leishmania infantum (strain JPCM5) genome and de novo assembly into 36 contigs.

Sci Rep 2017 12 22;7(1):18050. Epub 2017 Dec 22.

Centro de Biología Molecular "Severo Ochoa" (CSIC-UAM), Campus de Excelencia Internacional (CEI) UAM+CSIC, Universidad Autónoma de Madrid, Madrid, Spain.

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http://www.nature.com/articles/s41598-017-18374-y
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http://dx.doi.org/10.1038/s41598-017-18374-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741766PMC
December 2017

Infection with diverse immune-modulating poxviruses elicits different compositional shifts in the mouse gut microbiome.

PLoS One 2017 10;12(3):e0173697. Epub 2017 Mar 10.

Centro de Biología Molecular Severo Ochoa, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad Autónoma de Madrid (UAM), Madrid, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0173697PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345840PMC
August 2017

Aquatic viral metagenomics: Lights and shadows.

Virus Res 2017 07 24;239:87-96. Epub 2016 Nov 24.

Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Científicas y Universidad Autónoma de Madrid), Madrid, Spain. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01681702163049
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http://dx.doi.org/10.1016/j.virusres.2016.11.021DOI Listing
July 2017

Dataset for distribution of SIDER2 elements in the genome and transcriptome.

Data Brief 2017 Apr 10;11:39-43. Epub 2017 Jan 10.

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, 28049 Madrid, Spain.

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https://linkinghub.elsevier.com/retrieve/pii/S23523409173000
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http://dx.doi.org/10.1016/j.dib.2017.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247276PMC
April 2017

Genomic cartography and proposal of nomenclature for the repeated, interspersed elements of the Leishmania major SIDER2 family and identification of SIDER2-containing transcripts.

Mol Biochem Parasitol 2017 03 27;212:9-15. Epub 2016 Dec 27.

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, 28049 Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.molbiopara.2016.12.009DOI Listing
March 2017

RNA-Seq Based Transcriptome Analysis of the Type I Interferon Host Response upon Vaccinia Virus Infection of Mouse Cells.

J Immunol Res 2017 9;2017:5157626. Epub 2017 Feb 9.

Centro de Biología Molecular Severo Ochoa, Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid (CSIC-UAM), 28049 Madrid, Spain.

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http://dx.doi.org/10.1155/2017/5157626DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322442PMC
March 2017

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.

BMC Genomics 2017 01 3;18(1). Epub 2017 Jan 3.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.

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http://dx.doi.org/10.1186/s12864-016-3404-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209911PMC
January 2017

Genome Sequence of Herpes Simplex Virus 1 Strain SC16.

Genome Announc 2017 Jan 26;5(4). Epub 2017 Jan 26.

Department of Virology and Microbiology, Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Científicas and Universidad Autónoma de Madrid), Cantoblanco, Madrid, Spain

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http://dx.doi.org/10.1128/genomeA.01392-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270689PMC
January 2017

Monitoring of airborne biological particles in outdoor atmosphere. Part 2: Metagenomics applied to urban environments.

Int Microbiol 2016 Jun;19(2):69-80

Higher Technical School of Industrial Engineering, Technical University of Madrid, Madrid, Spain.

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http://dx.doi.org/10.2436/20.1501.01.265DOI Listing
June 2016

Monitoring of airborne biological particles in outdoor atmosphere. Part 1: Importance, variability and ratios.

Int Microbiol 2016 Mar;19(1):1-13

Higher Technical School of Industrial Engineering, Technical University of Madrid, Madrid, Spain.

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http://dx.doi.org/10.2436/20.1501.01.258DOI Listing
March 2016

Resequencing and assembly of seven complex loci to improve the Leishmania major (Friedlin strain) reference genome.

Parasit Vectors 2016 Feb 8;9:74. Epub 2016 Feb 8.

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, c/ Nicolás Cabrera, 1, 28049, Madrid, Spain.

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http://dx.doi.org/10.1186/s13071-016-1329-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4746890PMC
February 2016

Global variability in gene expression and alternative splicing is modulated by mitochondrial content.

Genome Res 2015 May 23;25(5):633-44. Epub 2015 Mar 23.

MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Headington, Oxford OX3 9DS, United Kingdom; Centro Nacional de Biotecnología, CSIC, Campus de Cantoblanco, 28049 Madrid, Spain.

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http://dx.doi.org/10.1101/gr.178426.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417112PMC
May 2015

Complex tissue-specific patterns and distribution of multiple RAGE splice variants in different mammals.

Genome Biol Evol 2013 ;5(12):2420-35

Centro de Biología Molecular Severo Ochoa (CBMSO), Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid (CSIC-UAM), Spain.

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http://dx.doi.org/10.1093/gbe/evt188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879976PMC
August 2014

Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples.

BMC Genomics 2013 Mar 22;14:199. Epub 2013 Mar 22.

Centro de Biología Molecular Severo Ochoa (CBMSO), Consejo Superior de Investigaciones Científicas (CSIC)-Universidad Autónoma de Madrid, Madrid, Spain.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-14-199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626593PMC
March 2013