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Publications Authored by Albert J Poustka | PubFacts
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Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria.

Curr Biol 2019 Jun 16;29(11):1818-1826.e6. Epub 2019 May 16.

Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK; Department of Computer Science, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2019.04.009DOI Listing
June 2019

The complete mitochondrial genome of Telmatobufo australis (Amphibia: Anura: Calyptocephalellidae).

Mitochondrial DNA A DNA Mapp Seq Anal 2016 07 22;27(4):2817-8. Epub 2015 Jun 22.

a Environmental and Phylogenomics Group, Dahlem Centre for Genome Research and Medical Systems Biology , Berlin , Germany .

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http://dx.doi.org/10.3109/19401736.2015.1053082DOI Listing
July 2016

RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins.

Development 2016 Feb 11;143(4):703-14. Epub 2016 Jan 11.

Department of Biology, Boston University, Boston, MA 02215, USA Program in Molecular Biology, Cell Biology and Biochemistry, Boston University, Boston, MA 02215, USA Program in Bioinformatics, Boston University, Boston, MA 02215, USA

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http://dev.biologists.org/content/143/4/703.full.pdf
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http://dev.biologists.org/cgi/doi/10.1242/dev.129312
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http://dx.doi.org/10.1242/dev.129312DOI Listing
February 2016

The nervous system of Xenacoelomorpha: a genomic perspective.

J Exp Biol 2015 Feb;218(Pt 4):618-28

Departament de Genètica, Universitat de Barcelona, Av. Diagonal, 643, 08028-Barcelona, Catalonia, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys, 23 08010 Barcelona, Catalonia, Spain

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http://dx.doi.org/10.1242/jeb.110379DOI Listing
February 2015

LTR retroelements are intrinsic components of transcriptional networks in frogs.

BMC Genomics 2014 Jul 23;15:626. Epub 2014 Jul 23.

Dahlem Center for Genome Research and Medical Systems Biology, Fabeckstraße 60-62, 14195 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2164-15-626DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131045PMC
July 2014

Acoelomorph flatworms are deuterostomes related to Xenoturbella.

Nature 2011 Feb;470(7333):255-8

Centre Robert-Cedergren, Département de Biochimie, Université de Montréal, Succursale Centre-Ville, Montréal, Québec H3C 3J7, Canada.

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http://dx.doi.org/10.1038/nature09676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4025995PMC
February 2011

Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix.

Proteome Sci 2010 Jun 17;8:33. Epub 2010 Jun 17.

Max-Planck-Institut für Biochemie, Abteilung Proteomics und Signaltransduktion, D-82152 Martinsried, Am Klopferspitz 18, Germany.

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http://dx.doi.org/10.1186/1477-5956-8-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909932PMC
June 2010

Data integration using scanners with SQL output--the bioscanners project at sourceforge.

J Integr Bioinform 2010 Mar 25;7(3). Epub 2010 Mar 25.

Max Planck Insitute of Molecular PlantPhysiology, University of Potsdam, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2010-122DOI Listing
March 2010

Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix: identification of a major acidic sea urchin tooth phosphoprotein, phosphodontin.

Proteome Sci 2010 Feb 8;8(1). Epub 2010 Feb 8.

Max-Planck-Institut für Biochemie, Abteilung Proteomics und Signaltransduktion, D-82152 Martinsried, Am Klopferspitz 18, Germany.

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http://proteomesci.biomedcentral.com/articles/10.1186/1477-5
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http://dx.doi.org/10.1186/1477-5956-8-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830187PMC
February 2010

Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network.

BMC Syst Biol 2009 Aug 23;3:83. Epub 2009 Aug 23.

Max-Planck-Institute for Molecular Genetics, Ihnestr 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1186/1752-0509-3-83DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2739852PMC
August 2009

Chordin is required for neural but not axial development in sea urchin embryos.

Dev Biol 2009 Apr 29;328(2):221-33. Epub 2009 Jan 29.

Biology Department, Boston University, 24 Cummington, Boston, MA, USA.

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http://dx.doi.org/10.1016/j.ydbio.2009.01.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700341PMC
April 2009

In-depth, high-accuracy proteomics of sea urchin tooth organic matrix.

Proteome Sci 2008 Dec 9;6:33. Epub 2008 Dec 9.

Max-Planck-Institut für Biochemie, Abteilung Proteomics und Signaltransduktion, Martinsried, Germany.

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http://dx.doi.org/10.1186/1477-5956-6-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614417PMC
December 2008

Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement.

Genome Res 2008 Oct 14;18(10):1582-91. Epub 2008 Jul 14.

Max Planck Institute for Molecular Genetics, 12169 Berlin, Germany.

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http://dx.doi.org/10.1101/gr.080119.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556266PMC
October 2008

GOblet: annotation of anonymous sequence data with gene ontology and pathway terms.

J Integr Bioinform 2008 Aug 25;5(2). Epub 2008 Aug 25.

Potsdam University, Bioinformatics Group, c/o MPIMP, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.2390/biecoll-jib-2008-104DOI Listing
August 2008

Modeling development: spikes of the sea urchin.

Genome Inform 2007 ;18:75-84

Max-Planck-Institute for Molecular Genetics, Ihnestr 63-73, 14195 Berlin, Germany.

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August 2008

The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes.

Proteome Sci 2008 Aug 11;6:22. Epub 2008 Aug 11.

Max-Planck-Institut für Biochemie, Martinsried, Am Klopferspitz, Germany.

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http://dx.doi.org/10.1186/1477-5956-6-22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2527298PMC
August 2008

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
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Timing and mechanism of ancient vertebrate genome duplications -- the adventure of a hypothesis.

Trends Genet 2005 Oct;21(10):559-67

Evolution and Development Group, Department of Vertebrate Genomics, Max-Planck Institut für Molekulare Genetik, Ihnestrasse 73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1016/j.tig.2005.08.004DOI Listing
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On the origin of the chordate central nervous system: expression of onecut in the sea urchin embryo.

Evol Dev 2004 Jul-Aug;6(4):227-36

Max Planck Institute for Molecular Genetics, Department of Vertebrate Genomics, Evolution and Development Group, Ihnestrasse 73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1111/j.1525-142X.2004.04028.xDOI Listing
March 2005

Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo.

Dev Dyn 2004 Dec;231(4):727-40

Department of Cell Biology and Anatomy, Louisiana State University Health Sciences Center, New Orleans, Louisiana 70112-1393, USA.

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http://dx.doi.org/10.1002/dvdy.20194DOI Listing
December 2004

Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters.

Genome Res 2003 Dec;13(12):2736-46

Evolution and Development Group, Max Planck Institute for Molecular Genetics, Department of Vertebrate Genomics, 14195 Berlin, Germany.

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http://dx.doi.org/10.1101/gr.1674103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403816PMC
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New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes.

Genome Res 2003 Jun;13(6A):1056-66

Evolution and Development Group, Department Professor H. Lehrach, Max-Planck Institut für Molekulare Genetik, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1101/gr.874803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403660PMC
June 2003

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening.

Dev Biol 2002 Jun;246(1):191-208

Division of Biology 156-29, California Institute of Technology, Pasadena 91125, USA.

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http://dx.doi.org/10.1006/dbio.2002.0654DOI Listing
June 2002