Alan L Archibald

Alan L Archibald

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Alan L Archibald

Alan L Archibald

Publications by authors named "Alan L Archibald"

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Livestock 2.0 - genome editing for fitter, healthier, and more productive farmed animals.

Genome Biol 2018 11 26;19(1):204. Epub 2018 Nov 26.

The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s13059-018-1583-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6258497PMC
November 2018

Pigs Lacking the Scavenger Receptor Cysteine-Rich Domain 5 of CD163 Are Resistant to Porcine Reproductive and Respiratory Syndrome Virus 1 Infection.

J Virol 2018 08 31;92(16). Epub 2018 Jul 31.

The Roslyn Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, United Kingdom.

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http://dx.doi.org/10.1128/JVI.00415-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069206PMC
August 2018

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

PLoS Genet 2017 Sep 15;13(9):e1006997. Epub 2017 Sep 15.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1006997DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626511PMC
September 2017

Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.

BMC Genomics 2017 04 24;18(1):323. Epub 2017 Apr 24.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12864-017-3691-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5404281PMC
April 2017

Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2).

Front Genet 2015 27;6:338. Epub 2015 Nov 27.

Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh Edinburgh, UK.

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http://dx.doi.org/10.3389/fgene.2015.00338DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662242PMC
December 2015

Lawsonia intracellularis infection of intestinal crypt cells is associated with specific depletion of secreted MUC2 in goblet cells.

Vet Immunol Immunopathol 2015 Nov 19;168(1-2):61-7. Epub 2015 Aug 19.

The Roslin Institute, University of Edinburgh, Easter Bush Campus, Roslin, Midlothian EH25 9RG, UK; Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Roslin, Midlothian EH25 9RG, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01652427150017
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http://dx.doi.org/10.1016/j.vetimm.2015.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4651051PMC
November 2015

Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome.

BMC Genomics 2015 Nov 18;16:970. Epub 2015 Nov 18.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, Edinburgh, UK.

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http://dx.doi.org/10.1186/s12864-015-2111-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4652390PMC
November 2015

Third Report on Chicken Genes and Chromosomes 2015.

Authors:
Michael Schmid Jacqueline Smith David W Burt Bronwen L Aken Parker B Antin Alan L Archibald Chris Ashwell Perry J Blackshear Clarissa Boschiero C Titus Brown Shane C Burgess Hans H Cheng William Chow Derrick J Coble Amanda Cooksey Richard P M A Crooijmans Joana Damas Richard V N Davis Dirk-Jan de Koning Mary E Delany Thomas Derrien Takele T Desta Ian C Dunn Matthew Dunn Hans Ellegren Lél Eöry Ionas Erb Marta Farré Mario Fasold Damarius Fleming Paul Flicek Katie E Fowler Laure Frésard David P Froman Valerie Garceau Paul P Gardner Almas A Gheyas Darren K Griffin Martien A M Groenen Thomas Haaf Olivier Hanotte Alan Hart Julien Häsler S Blair Hedges Jana Hertel Kerstin Howe Allen Hubbard David A Hume Pete Kaiser Darek Kedra Stephen J Kemp Christophe Klopp Kalmia E Kniel Richard Kuo Sandrine Lagarrigue Susan J Lamont Denis M Larkin Raman A Lawal Sarah M Markland Fiona McCarthy Heather A McCormack Marla C McPherson Akira Motegi Stefan A Muljo Andrea Münsterberg Rishi Nag Indrajit Nanda Michael Neuberger Anne Nitsche Cedric Notredame Harry Noyes Rebecca O'Connor Elizabeth A O'Hare Andrew J Oler Sheila C Ommeh Helio Pais Michael Persia Frédérique Pitel Likit Preeyanon Pablo Prieto Barja Elizabeth M Pritchett Douglas D Rhoads Charmaine M Robinson Michael N Romanov Max Rothschild Pierre-François Roux Carl J Schmidt Alisa-Sophia Schneider Matthew G Schwartz Steve M Searle Michael A Skinner Craig A Smith Peter F Stadler Tammy E Steeves Claus Steinlein Liang Sun Minoru Takata Igor Ulitsky Qing Wang Ying Wang Wesley C Warren Jonathan M D Wood David Wragg Huaijun Zhou

Cytogenet Genome Res 2015 14;145(2):78-179. Epub 2015 Jul 14.

Department of Human Genetics, University of Würzburg, Würzburg, Germany.

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http://dx.doi.org/10.1159/000430927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120589PMC
October 2015

Beyond the whole genome consensus: unravelling of PRRSV phylogenomics using next generation sequencing technologies.

Virus Res 2014 Dec 12;194:167-74. Epub 2014 Oct 12.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG Midlothian, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2014.10.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275598PMC
December 2014

Design and development of exome capture sequencing for the domestic pig (Sus scrofa).

BMC Genomics 2014 Jul 3;15:550. Epub 2014 Jul 3.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh EH25 9RG, UK.

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http://dx.doi.org/10.1186/1471-2164-15-550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4099480PMC
July 2014

The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide.

BMC Genomics 2013 Aug 28;14:581. Epub 2013 Aug 28.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, Edinburgh EH25 9RG, United Kingdom.

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http://dx.doi.org/10.1186/1471-2164-14-581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3766131PMC
August 2013

Comparative analysis of monocyte subsets in the pig.

J Immunol 2013 Jun 10;190(12):6389-96. Epub 2013 May 10.

The Roslin Institute and The Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom.

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http://dx.doi.org/10.4049/jimmunol.1300365DOI Listing
June 2013

Secreted phosphoprotein 1 expression in endometrium and placental tissues of hyperprolific large white and meishan gilts.

Biol Reprod 2013 May 16;88(5):120. Epub 2013 May 16.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, Scotland, United Kingdom.

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https://academic.oup.com/biolreprod/article-lookup/doi/10.10
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http://dx.doi.org/10.1095/biolreprod.112.104679DOI Listing
May 2013

Signatures of diversifying selection in European pig breeds.

PLoS Genet 2013 Apr 25;9(4):e1003453. Epub 2013 Apr 25.

The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1003453DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3636142PMC
April 2013

Development of a genetic tool for product regulation in the diverse British pig breed market.

BMC Genomics 2012 Nov 15;13:580. Epub 2012 Nov 15.

The Roslin Institute and (Royal) Dick School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-580DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499217PMC
November 2012

Strong signatures of selection in the domestic pig genome.

Proc Natl Acad Sci U S A 2012 Nov 14;109(48):19529-36. Epub 2012 Nov 14.

Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden.

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http://dx.doi.org/10.1073/pnas.1217149109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3511700PMC
November 2012

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

USP18 restricts PRRSV growth through alteration of nuclear translocation of NF-κB p65 and p50 in MARC-145 cells.

Virus Res 2012 Oct 13;169(1):264-7. Epub 2012 Jul 13.

Key Laboratory of Swine Genetics and Breeding of Ministry of Agriculture, and Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China.

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http://dx.doi.org/10.1016/j.virusres.2012.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3501733PMC
October 2012

Reprogramming pig fetal fibroblasts reveals a functional LIF signaling pathway.

Cell Reprogram 2012 Apr 17;14(2):112-22. Epub 2012 Feb 17.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Easter Bush, Midlothian, United Kingdom.

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http://dx.doi.org/10.1089/cell.2011.0078DOI Listing
April 2012

Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide.

J Immunol 2012 Apr 5;188(7):3382-94. Epub 2012 Mar 5.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK.

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http://dx.doi.org/10.4049/jimmunol.1102649DOI Listing
April 2012

Detection of a quantitative trait locus associated with resistance to Ascaris suum infection in pigs.

Int J Parasitol 2012 Apr;42(4):383-91

Parasitology, Health, and Development, Department of Veterinary Disease Biology, University of Copenhagen, Dyrlægevej 100, DK-1870 Frederiksberg, Denmark.

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http://dx.doi.org/10.1016/j.ijpara.2012.02.010DOI Listing
April 2012

Evaluation of approaches for identifying population informative markers from high density SNP chips.

BMC Genet 2011 May 13;12:45. Epub 2011 May 13.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, Scotland, UK.

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http://dx.doi.org/10.1186/1471-2156-12-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118130PMC
May 2011

The receptor locus for Escherichia coli F4ab/F4ac in the pig maps distal to the MUC4-LMLN region.

Mamm Genome 2011 Feb 7;22(1-2):122-9. Epub 2010 Dec 7.

Institute of Plant, Animal and Agroecosystem Sciences, ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1007/s00335-010-9305-3DOI Listing
February 2011

Functional analysis of the porcine USP18 and its role during porcine arterivirus replication.

Gene 2009 Jun 11;439(1-2):35-42. Epub 2009 Mar 11.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, Midlothian EH25 9PS, UK.

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http://dx.doi.org/10.1016/j.gene.2009.02.021DOI Listing
June 2009

Comparative genomics of Toll-like receptor signalling in five species.

BMC Genomics 2009 May 11;10:216. Epub 2009 May 11.

The Roslin Institute and R(D)SVS, University of Edinburgh, Roslin, Midlothian, Edinburgh EH259PS, UK.

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http://dx.doi.org/10.1186/1471-2164-10-216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689273PMC
May 2009

Genetic perspectives on host responses to porcine reproductive and respiratory syndrome (PRRS).

Viral Immunol 2007 Sep;20(3):343-58

Division of Genetics and Genomics, Roslin Institute (Edinburgh), Roslin, Midlothian, United Kingdom.

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http://dx.doi.org/10.1089/vim.2007.0024DOI Listing
September 2007

Identification of a single killer immunoglobulin-like receptor (KIR) gene in the porcine leukocyte receptor complex on chromosome 6q.

Immunogenetics 2006 Jun 29;58(5-6):481-6. Epub 2006 Apr 29.

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, England, UK.

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http://dx.doi.org/10.1007/s00251-006-0110-9DOI Listing
June 2006

A QTL affecting daily feed intake maps to Chromosome 2 in pigs.

Mamm Genome 2005 Jun;16(6):464-70

Aberdeen Centre for Energy Regulation and Obesity (ACERO), Energy Balance and Obesity Division, Rowett Research Institute, Bucksburn, Aberdeen AB21 9SB, Scotland, UK.

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http://dx.doi.org/10.1007/s00335-004-4026-0DOI Listing
June 2005

A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig.

Nature 2003 Oct;425(6960):832-6

Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala University, BMC, Box 597, SE-751 24 Uppsala, Sweden.

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http://dx.doi.org/10.1038/nature02064DOI Listing
October 2003

Mapping quantitative trait loci affecting female reproductive traits on porcine chromosome 8.

Biol Reprod 2003 Jun 22;68(6):2172-9. Epub 2003 Jan 22.

Roslin Institute (Edinburgh), Roslin, Midlothian, EH25 9PS, United Kingdom.

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https://academic.oup.com/biolreprod/article-lookup/doi/10.10
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http://dx.doi.org/10.1095/biolreprod.102.012955DOI Listing
June 2003

A large duplication associated with dominant white color in pigs originated by homologous recombination between LINE elements flanking KIT.

Mamm Genome 2002 Oct;13(10):569-77

Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Box 597, S-751 24 Uppsala, Sweden.

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http://dx.doi.org/10.1007/s00335-002-2184-5DOI Listing
October 2002