Publications by authors named "Alan Cooper"

100Publications

Toxic Epidermal Necrolysis and Steven-Johnson Syndrome: A Comprehensive Review.

Adv Wound Care (New Rochelle) 2020 07 9;9(7):426-439. Epub 2020 Jan 9.

Department of Dermatology, Royal North Shore Hospital, Sydney, Australia.

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July 2020

The Dogma of Dingoes-Taxonomic status of the dingo: A reply to Smith et al.

Zootaxa 2019 Mar 4;4564(1):zootaxa.4564.1.7. Epub 2019 Mar 4.

Biosecurity NSW, NSW Department of Primary Industries, Orange, New South Wales 2800, Australia. School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Division of Mammals, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013-7012, United States of America. E-mail: (Don E. Wilson) Australian Museum Research Institute, Australian Museum, 1 William St. Sydney, New South Wales 2010, Australia..

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March 2019

Widespread male sex bias in mammal fossil and museum collections.

Proc Natl Acad Sci U S A 2019 09 3;116(38):19019-19024. Epub 2019 Sep 3.

Australian Centre for Ancient DNA, The University of Adelaide, Adelaide, SA 5005, Australia;

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September 2019

Using hominin introgression to trace modern human dispersals.

Proc Natl Acad Sci U S A 2019 07 12;116(31):15327-15332. Epub 2019 Jul 12.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, SA 5000, Australia

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July 2019

A new home for microbes.

Elife 2019 06 21;8. Epub 2019 Jun 21.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia.

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June 2019

Laboratory contamination over time during low-biomass sample analysis.

Mol Ecol Resour 2019 Jul 29;19(4):982-996. Epub 2019 Apr 29.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia.

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July 2019

Retrospective eDNA assessment of potentially harmful algae in historical ship ballast tank and marine port sediments.

Mol Ecol 2019 05 13;28(10):2476-2485. Epub 2019 May 13.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia.

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May 2019

Broadening the taxonomic scope of coral reef palaeoecological studies using ancient DNA.

Mol Ecol 2019 05 14;28(10):2636-2652. Epub 2019 May 14.

Australian Centre for Ancient DNA, The University of Adelaide, Adelaide, South Australia, Australia.

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May 2019

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

Trends Microbiol 2019 02 26;27(2):105-117. Epub 2018 Nov 26.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, SA, Australia; Australian Research Council (ARC) Centre of Excellence for Australian Biodiversity and Heritage (CABAH), University of Adelaide, Adelaide, SA, Australia.

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February 2019

Reconstructing the Evolution of Giant Extinct Kangaroos: Comparing the Utility of DNA, Morphology, and Total Evidence.

Syst Biol 2019 05;68(3):520-537

School of Earth, Environmental and Biological Sciences, Queensland University of Technology, 2, George Street, Brisbane, QLD 4000, Australia.

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May 2019

Reconstructing the Deep Population History of Central and South America.

Cell 2018 11 8;175(5):1185-1197.e22. Epub 2018 Nov 8.

Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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November 2018

Consequences of colonialism: A microbial perspective to contemporary Indigenous health.

Am J Phys Anthropol 2018 10 29;167(2):423-437. Epub 2018 Aug 29.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia.

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October 2018

Molecular resolution to a morphological controversy: The case of North American fossil muskoxen Bootherium and Symbos.

Mol Phylogenet Evol 2018 12 16;129:70-76. Epub 2018 Aug 16.

Australian Centre for Ancient DNA (ACAD), School of Biological Sciences, Environment Institute, University of Adelaide, Australia. Electronic address:

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December 2018

When did first reach Southeast Asia and Sahul?

Proc Natl Acad Sci U S A 2018 08 6;115(34):8482-8490. Epub 2018 Aug 6.

Australian Research Council Centre of Excellence in Australian Biodiversity and Heritage, University of New South Wales, Sydney, NSW 2052, Australia.

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August 2018

Ancient plant DNA in the genomic era.

Nat Plants 2018 07;4(7):394-396

Australian Centre for Ancient DNA, University of Adelaide, South Australia, Australia.

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July 2018

The role of sentinel lymph node biopsy as a staging procedure in patients with melanoma - A critical appraisal.

Australas J Dermatol 2018 08 11;59(3):235-236. Epub 2018 May 11.

Melanoma Institute Australia, The University of Sydney, Sydney, NSW, Australia.

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August 2018

Genetic diversity and drivers of dwarfism in extinct island emu populations.

Biol Lett 2018 04;14(4)

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia.

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April 2018

Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis.

Mol Phylogenet Evol 2018 08 31;125:188-195. Epub 2018 Mar 31.

Departament de Biodiversitat i Conservació, Institut Mediterrani d'Estudis Avançats (CSIC-UIB), Esporles, Illes Balears, Spain. Electronic address:

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August 2018

Coprolites reveal ecological interactions lost with the extinction of New Zealand birds.

Proc Natl Acad Sci U S A 2018 02;115(7):1546-1551

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, SA 5005, Australia;

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February 2018

Frog foams and natural protein surfactants.

Colloids Surf A Physicochem Eng Asp 2017 Dec;534:120-129

Institute of Molecular, Cell & Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, G12 8QQ, UK.

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December 2017

Atopic dermatitis: the new frontier.

Med J Aust 2017 Oct;207(8):351-356

Royal North Shore Hospital, Sydney, NSW.

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October 2017

Megafaunal isotopes reveal role of increased moisture on rangeland during late Pleistocene extinctions.

Nat Ecol Evol 2017 Apr 18;1(5):125. Epub 2017 Apr 18.

Australian Centre for Ancient DNA, University of Adelaide, North Terrace, South Australia 5005, Australia.

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April 2017

Role of sentinel lymph node biopsy as a staging procedure in patients with melanoma: A critical appraisal.

Australas J Dermatol 2017 Nov 14;58(4):268-273. Epub 2017 Jul 14.

Melanoma Institute Australia, University of Sydney, Sydney, New South Wales, Australia.

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November 2017

How hedge woody species diversity and habitat change is a function of land use history and recent management in a European agricultural landscape.

J Environ Manage 2017 Jul 31;196:692-701. Epub 2017 Mar 31.

Ulster University, School of Geography and Environmental Sciences, Cromore Rd., Coleraine, BT52 1SA, United Kingdom.

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July 2017

Ancient DNA analysis of the extinct North American flat-headed peccary (Platygonus compressus).

Mol Phylogenet Evol 2017 Jul 28;112:258-267. Epub 2017 Mar 28.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Australia. Electronic address:

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July 2017

Adsorption of the natural protein surfactant Rsn-2 onto liquid interfaces.

Phys Chem Chem Phys 2017 Mar;19(12):8584-8594

Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow, G1 1XL, UK and School of Chemistry, National University of Ireland Galway, Galway, Ireland.

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March 2017

Age-related environmental gradients influence invertebrate distribution in the Prince Charles Mountains, East Antarctica.

R Soc Open Sci 2016 Dec 14;3(12):160296. Epub 2016 Dec 14.

South Australian Museum, Science Centre, Adelaide, South Australia 5000, Australia; School of Pharmacy and Medical Sciences, University of South Australia, Adelaide, South Australia 5001, Australia.

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December 2016

Modern management of acne.

Med J Aust 2017 Jan;206(1):41-45

Royal North Shore Hospital, Sydney, NSW.

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January 2017

Review of Toxic Epidermal Necrolysis.

Int J Mol Sci 2016 Dec 18;17(12). Epub 2016 Dec 18.

Dermatology Department, Royal North Shore Hospital, 2065 Sydney, Australia.

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December 2016

Exploring Relationships between Host Genome and Microbiome: New Insights from Genome-Wide Association Studies.

Front Microbiol 2016 12;7:1611. Epub 2016 Oct 12.

Australian Centre for Ancient DNA, School of Biological Sciences and The Environment Institute, The University of Adelaide, Adelaide SA, Australia.

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October 2016

The origin and phylogenetic relationships of the New Zealand ravens.

Mol Phylogenet Evol 2017 01 24;106:136-143. Epub 2016 Sep 24.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia.

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January 2017

Diluted honey inhibits biofilm formation: potential application in urinary catheter management?

J Clin Pathol 2017 Feb 26;70(2):140-144. Epub 2016 Sep 26.

Faculty of Health Sciences, University of Southampton, Southampton, UK.

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February 2017

Isolating Viable Ancient Bacteria: What You Put In Is What You Get Out.

Genome Announc 2016 Aug 25;4(4). Epub 2016 Aug 25.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, Australia.

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August 2016

High-throughput Sequencing of Trace Quantities of Soil Provides Reproducible and Discriminative Fungal DNA Profiles.

J Forensic Sci 2016 Mar 1;61(2):478-484. Epub 2016 Feb 1.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Darling Building, North Terrace Campus, Adelaide, SA, 5005, Australia.

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March 2016

Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation.

Sci Adv 2016 06 17;2(6):e1501682. Epub 2016 Jun 17.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia.; Henry Wellcome Ancient Biomolecules Centre, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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June 2016

Ancient mitochondrial genomes clarify the evolutionary history of New Zealand's enigmatic acanthisittid wrens.

Mol Phylogenet Evol 2016 Sep 31;102:295-304. Epub 2016 May 31.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, North Terrace Campus, South Australia 5005, Australia.

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September 2016

Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru's Central Coast during the Middle Horizon.

PLoS One 2016 1;11(6):e0155508. Epub 2016 Jun 1.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia.

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July 2017

Aqueous solubilization of C60 fullerene by natural protein surfactants, latherin and ranaspumin-2.

Biophys Chem 2016 Jul-Aug;214-215:27-32. Epub 2016 May 13.

School of Chemistry, University of Glasgow, Glasgow, G12 8QQ, UK. Electronic address:

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May 2017

Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos.

Mol Ecol 2016 Jul 30;25(14):3499-508. Epub 2016 Jun 30.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia.

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July 2016

Response to Comment on "Abrupt warming events drove Late Pleistocene Holarctic megafaunal turnover".

Science 2016 Feb;351(6276):927

Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.

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February 2016

New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages during the Oligocene.

Genome Biol Evol 2015 Oct 15;7(11):2983-95. Epub 2015 Oct 15.

Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand.

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October 2015

Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

Science 2015 Sep;349(6255):1460

School of Earth, Environmental, and Biological Sciences, Queensland University of Technology, Brisbane, Australia.

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September 2015

Inflammation, Endothelial Dysfunction, and Thromboembolism.

Semin Thromb Hemost 2015 Sep 16;41(6):547-8. Epub 2015 Sep 16.

School of Pharmacy and Biomedical Sciences, Portsmouth University, Portsmouth, United Kingdom.

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September 2015

PALEOECOLOGY. Abrupt warming events drove Late Pleistocene Holarctic megafaunal turnover.

Science 2015 Aug 23;349(6248):602-6. Epub 2015 Jul 23.

Environment Institute and School of Biological Sciences, University of Adelaide, Adelaide, Australia.

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August 2015

Using Amplicon Sequencing To Characterize and Monitor Bacterial Diversity in Drinking Water Distribution Systems.

Appl Environ Microbiol 2015 Sep 10;81(18):6463-73. Epub 2015 Jul 10.

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia.

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September 2015

Reintroduction of locally extinct vertebrates impacts arid soil fungal communities.

Mol Ecol 2015 Jun;24(12):3194-205

Australian Centre for Ancient DNA, University of Adelaide, Adelaide, SA, 5005, Australia.

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June 2015

Predicting the origin of soil evidence: High throughput eukaryote sequencing and MIR spectroscopy applied to a crime scene scenario.

Forensic Sci Int 2015 Jun 23;251:22-31. Epub 2015 Mar 23.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, 5005, Australia.

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June 2015

Residual soil DNA extraction increases the discriminatory power between samples.

Forensic Sci Med Pathol 2015 Jun 27;11(2):268-72. Epub 2015 Feb 27.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, Australia,

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June 2015

Discovery of hydroxyaniline amides as selective Extracellular Regulated Kinase (Erk) inhibitors.

Bioorg Med Chem Lett 2015 Apr 4;25(7):1627-9. Epub 2015 Feb 4.

Discovery Oncology, Merck Research Laboratories, 2015 Galloping Hill Rd, Kenilworth, NJ 07033, United States.

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April 2015

The skin microbiome: Associations between altered microbial communities and disease.

Australas J Dermatol 2015 Nov 25;56(4):268-74. Epub 2015 Feb 25.

Department of Dermatology, Royal North Shore Hospital, Sydney, New South Wales, Australia.

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November 2015

Ancient DNA analysis of dental calculus.

J Hum Evol 2015 Feb 1;79:119-24. Epub 2014 Dec 1.

The Australian Centre for Ancient DNA, The University of Adelaide, Adelaide, Australia. Electronic address:

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February 2015

Role of nanocrystalline silver dressings in the management of toxic epidermal necrolysis (TEN) and TEN/Stevens-Johnson syndrome overlap.

Australas J Dermatol 2015 Nov 4;56(4):298-302. Epub 2014 Nov 4.

Department of Dermatology, Royal North Shore Hospital, Sydney, Australia.

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November 2015

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:
Iosif Lazaridis Nick Patterson Alissa Mittnik Gabriel Renaud Swapan Mallick Karola Kirsanow Peter H Sudmant Joshua G Schraiber Sergi Castellano Mark Lipson Bonnie Berger Christos Economou Ruth Bollongino Qiaomei Fu Kirsten I Bos Susanne Nordenfelt Heng Li Cesare de Filippo Kay Prüfer Susanna Sawyer Cosimo Posth Wolfgang Haak Fredrik Hallgren Elin Fornander Nadin Rohland Dominique Delsate Michael Francken Jean-Michel Guinet Joachim Wahl George Ayodo Hamza A Babiker Graciela Bailliet Elena Balanovska Oleg Balanovsky Ramiro Barrantes Gabriel Bedoya Haim Ben-Ami Judit Bene Fouad Berrada Claudio M Bravi Francesca Brisighelli George B J Busby Francesco Cali Mikhail Churnosov David E C Cole Daniel Corach Larissa Damba George van Driem Stanislav Dryomov Jean-Michel Dugoujon Sardana A Fedorova Irene Gallego Romero Marina Gubina Michael Hammer Brenna M Henn Tor Hervig Ugur Hodoglugil Aashish R Jha Sena Karachanak-Yankova Rita Khusainova Elza Khusnutdinova Rick Kittles Toomas Kivisild William Klitz Vaidutis Kučinskas Alena Kushniarevich Leila Laredj Sergey Litvinov Theologos Loukidis Robert W Mahley Béla Melegh Ene Metspalu Julio Molina Joanna Mountain Klemetti Näkkäläjärvi Desislava Nesheva Thomas Nyambo Ludmila Osipova Jüri Parik Fedor Platonov Olga Posukh Valentino Romano Francisco Rothhammer Igor Rudan Ruslan Ruizbakiev Hovhannes Sahakyan Antti Sajantila Antonio Salas Elena B Starikovskaya Ayele Tarekegn Draga Toncheva Shahlo Turdikulova Ingrida Uktveryte Olga Utevska René Vasquez Mercedes Villena Mikhail Voevoda Cheryl A Winkler Levon Yepiskoposyan Pierre Zalloua Tatijana Zemunik Alan Cooper Cristian Capelli Mark G Thomas Andres Ruiz-Linares Sarah A Tishkoff Lalji Singh Kumarasamy Thangaraj Richard Villems David Comas Rem Sukernik Mait Metspalu Matthias Meyer Evan E Eichler Joachim Burger Montgomery Slatkin Svante Pääbo Janet Kelso David Reich Johannes Krause

Nature 2014 Sep;513(7518):409-13

1] Institute for Archaeological Sciences, University of Tübingen, Tübingen 72074, Germany. [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany. [3] Max Planck Institut für Geschichte und Naturwissenschaften, Jena 07745, Germany.

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September 2014

Forensic soil DNA analysis using high-throughput sequencing: a comparison of four molecular markers.

Forensic Sci Int Genet 2014 Nov 4;13:176-84. Epub 2014 Aug 4.

Australian Centre for Ancient DNA, School of Earth and Environmental Sciences, University of Adelaide, 5005, Australia.

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November 2014