Alan Christoffels

Alan Christoffels

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Alan Christoffels

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Structure based identification of novel inhibitors against ATP synthase of Mycobacterium tuberculosis: A combined in silico and in vitro study.

Int J Biol Macromol 2019 Aug 20;135:582-590. Epub 2019 May 20.

South African National Bioinformatics Institute (SANBI), SA Medical Research Council Bioinformatics Unit, University of the Western Cape, Private Bag X17, Bellville, 7535 Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2019.05.108DOI Listing
August 2019

COMBAT-TB-NeoDB: fostering Tuberculosis research through integrative analysis using graph database technologies.

Bioinformatics 2019 Aug 26. Epub 2019 Aug 26.

South African National Bioinformatics Institute, South African MRC Bioinformatics Unit, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1093/bioinformatics/btz658DOI Listing
August 2019

Predictive classifier models built from natural products with antimalarial bioactivity using machine learning approach.

PLoS One 2018 28;13(9):e0204644. Epub 2018 Sep 28.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Cape Town, South Africa.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0204644PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161899PMC
March 2019

Designing novel possible kinase inhibitor derivatives as therapeutics against Mycobacterium tuberculosis: An in silico study.

Sci Rep 2019 Mar 13;9(1):4405. Epub 2019 Mar 13.

South African National Bioinformatics Institute (SANBI), SA Medical Research Council Bioinformatics Unit, University of the Western Cape, Private Bag X17, Bellville, 7535, Cape Town, South Africa.

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http://dx.doi.org/10.1038/s41598-019-40621-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6416319PMC
March 2019

Prediction of human-Bacillus anthracis protein-protein interactions using multi-layer neural network.

Bioinformatics 2018 12;34(24):4159-4164

South African National Bioinformatics Institute, South African MRC Bioinformatics Unit.

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http://dx.doi.org/10.1093/bioinformatics/bty504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289132PMC
December 2018

Human Leukocyte Antigen-A, B, C, DRB1, and DQB1 Allele and Haplotype Frequencies in a Subset of 237 Donors in the South African Bone Marrow Registry.

J Immunol Res 2018 23;2018:2031571. Epub 2018 Apr 23.

Department of Immunology, SAMRC Extramural Unit for Stem Cell Research and Therapy, Institute for Cellular and Molecular Medicine, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa.

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http://dx.doi.org/10.1155/2018/2031571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5937380PMC
October 2018

An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench).

BMC Genet 2017 12 22;18(1):119. Epub 2017 Dec 22.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Belleville, 7535, South Africa.

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http://dx.doi.org/10.1186/s12863-017-0584-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741957PMC
December 2017

Structural and functional effects of nucleotide variation on the human TB drug metabolizing enzyme arylamine N-acetyltransferase 1.

J Mol Graph Model 2017 08 10;75:330-339. Epub 2017 Jun 10.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville, Cape Town 7535, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.jmgm.2017.04.026DOI Listing
August 2017

Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking.

Biopreserv Biobank 2017 Apr 4;15(2):116-120. Epub 2017 Apr 4.

1 South African National Bioinformatics Institute, SA Medical Research Council Unit, University of the Western Cape , Bellville, South Africa .

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http://www.liebertpub.com/doi/10.1089/bio.2017.0014
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http://dx.doi.org/10.1089/bio.2017.0014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397207PMC
April 2017

Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing.

Malar J 2016 Nov 8;15(1):542. Epub 2016 Nov 8.

SA Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Robert Sobukwe Road, Cape Town, 7535, South Africa.

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http://dx.doi.org/10.1186/s12936-016-1591-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5101901PMC
November 2016

Identification of phenotype-relevant differentially expressed genes in breast cancer demonstrates enhanced quantile discretization protocol's utility in multi-platform microarray data integration.

J Bioinform Comput Biol 2016 10 13;14(5):1650022. Epub 2016 Jul 13.

1 South African National Bioinformatics Institute/MRC, Unit for Bioinformatics Capacity Development, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa.

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http://dx.doi.org/10.1142/S0219720016500220DOI Listing
October 2016

Computational characterization of Iron metabolism in the Tsetse disease vector, Glossina morsitans: IRE stem-loops.

BMC Genomics 2016 08 8;17:561. Epub 2016 Aug 8.

South African Medical Research Council Bioinformatics Unit, The South African National Bioinformatics Institute (SANBI), University of the Western Cape, Robert Sobukwe Street, Bellville, South Africa.

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http://dx.doi.org/10.1186/s12864-016-2932-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4977773PMC
August 2016

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt.

PLoS Comput Biol 2016 Feb 4;12(2):e1004395. Epub 2016 Feb 4.

South African National Bioinformatics Institute/Medical Research Council of South Africa Bioinformatics Unit, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1371/journal.pcbi.1004395DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4742231PMC
February 2016

Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis.

BMC Bioinformatics 2016 Feb 8;17:75. Epub 2016 Feb 8.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1186/s12859-016-0898-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745158PMC
February 2016

Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species.

PLoS Negl Trop Dis 2016 Feb 17;10(2):e0004421. Epub 2016 Feb 17.

Molecular Biology and Bioinformatics Unit, International Centre of Insect Physiology and Ecology, Nairobi, Kenya.

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http://dx.doi.org/10.1371/journal.pntd.0004421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4757090PMC
February 2016

Prioritization of anti-malarial hits from nature: chemo-informatic profiling of natural products with in vitro antiplasmodial activities and currently registered anti-malarial drugs.

Malar J 2016 Jan 29;15:50. Epub 2016 Jan 29.

South African Medial Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa.

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http://dx.doi.org/10.1186/s12936-016-1087-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731946PMC
January 2016

TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis.

BMC Genomics 2015 Sep 22;16:722. Epub 2015 Sep 22.

South African MRC Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1186/s12864-015-1921-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578606PMC
September 2015

Evidence for a common biological pathway linking three Parkinson's disease-causing genes: parkin, PINK1 and DJ-1.

Eur J Neurosci 2015 May 11;41(9):1113-25. Epub 2015 Mar 11.

Division of Molecular Biology & Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 19063, Cape Town, 7505, South Africa.

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http://dx.doi.org/10.1111/ejn.12872DOI Listing
May 2015

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.

BMC Bioinformatics 2015 Feb 21;16:58. Epub 2015 Feb 21.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1186/s12859-015-0492-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344733PMC
February 2015

Evolution and Structural Analyses of Glossina morsitans (Diptera; Glossinidae) Tetraspanins.

Insects 2014 Nov 12;5(4):885-908. Epub 2014 Nov 12.

South African National Bioinformatics Institute (SANBI), University of the Western Cape, Private Bag X79, Bellville, Cape Town 7535, South Africa.

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http://dx.doi.org/10.3390/insects5040885DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4592607PMC
November 2014

Taste and odorant receptors of the coelacanth--a gene repertoire in transition.

J Exp Zool B Mol Dev Evol 2014 Sep 18;322(6):403-14. Epub 2013 Sep 18.

South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1002/jez.b.22531DOI Listing
September 2014

Chemosensory receptors in tsetse flies provide link between chemical and behavioural ecology.

Trends Parasitol 2014 Sep 10;30(9):426-8. Epub 2014 Jul 10.

South African MRC Bioinformatics Unit, South African National Bioinformatics Institute, University of The Western Cape, Private Bag X17, Bellville 7535, South Africa.

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http://dx.doi.org/10.1016/j.pt.2014.06.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679831PMC
September 2014

International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent.

PLoS Negl Trop Dis 2014 Aug 21;8(8):e3024. Epub 2014 Aug 21.

Yale School of Public Health, Department of Epidemiology and Public Health, New Haven, Connecticut, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0003024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140670PMC
August 2014

Research capacity. Enabling the genomic revolution in Africa.

Authors:
Charles Rotimi Akin Abayomi Alash'le Abimiku Victoria May Adabayeri Clement Adebamowo Ezekiel Adebiyi Adebowale D Ademola Adebowale Adeyemo Dwomoa Adu Dissou Affolabi Godfred Agongo Samuel Ajayi Sally Akarolo-Anthony Rufus Akinyemi Albert Akpalu Marianne Alberts Orlando Alonso Betancourt Ahmed Mansour Alzohairy Gobena Ameni Olukemi Amodu Gabriel Anabwani Kristian Andersen Fatiu Arogundade Oyedunni Arulogun Danny Asogun Rasheed Bakare Naby Balde Mary Lynn Baniecki Christine Beiswanger Alia Benkahla Lara Bethke Micheal Boehnke Vincent Boima James Brandful Andrew I Brooks Frank C Brosius Chester Brown Bruno Bucheton David T Burke Barrington G Burnett Stacy Carrington-Lawrence Nadia Carstens John Chisi Alan Christoffels Richard Cooper Heather Cordell Nigel Crowther Talishiea Croxton Jantina de Vries Leslie Derr Peter Donkor Seydou Doumbia Audrey Duncanson Ivy Ekem Ahmed El Sayed Mark E Engel John C K Enyaru Dean Everett Faisal M Fadlelmola Eyitayo Fakunle Kenneth H Fischbeck Anne Fischer Onikepe Folarin Junaid Gamieldien Robert F Garry Simani Gaseitsiwe Rasheed Gbadegesin Anita Ghansah Maria Giovanni Parham Goesbeck F Xavier Gomez-Olive Donald S Grant Ravnit Grewal Mark Guyer Neil A Hanchard Christian T Happi Scott Hazelhurst Branwen J Hennig Christiane Hertz- Fowler Winston Hide Friedhelm Hilderbrandt Christopher Hugo-Hamman Muntaser E Ibrahim Regina James Yasmina Jaufeerally-Fakim Carolyn Jenkins Ute Jentsch Pan-Pan Jiang Moses Joloba Victor Jongeneel Fourie Joubert Mukthar Kader Kathleen Kahn Pontiano Kaleebu Saidi H Kapiga Samar Kamal Kassim Ishmael Kasvosve Jonathan Kayondo Bernard Keavney Adeodata Kekitiinwa Sheik Humarr Khan Paul Kimmel Mary-Claire King Robert Kleta Mathurin Koffi Jeffrey Kopp Matthias Kretzler Judit Kumuthini Samuel Kyobe Catherine Kyobutungi Daniel T Lackland Karen A Lacourciere Guida Landouré Rita Lawlor Thomas Lehner Maia Lesosky Naomi Levitt Katherine Littler Zane Lombard Jeanne F Loring Sylvester Lyantagaye Annette Macleod Ebony B Madden Chengetai R Mahomva Julie Makani Manmak Mamven Marape Marape Graeme Mardon Patricia Marshall Darren P Martin Daniel Masiga Robin Mason Michael Mate-Kole Enock Matovu Mary Mayige Bongani M Mayosi Jean Claude Mbanya Sheryl A McCurdy Mark I McCarthy Helen McIlleron S O Mc'Ligeyo Corrine Merle Ana Olga Mocumbi Charles Mondo John V Moran Ayesha Motala Marva Moxey-Mims Wata Sununguko Mpoloka Chisomo L Msefula Thuli Mthiyane Nicola Mulder Gebregziab her Mulugeta Dieuodonne Mumba John Musuku Mo Nagdee Oyekanmi Nash Daouda Ndiaye Anh Quynh Nguyen Mark Nicol Oathokwa Nkomazana Shane Norris Betty Nsangi Alexander Nyarko Moffat Nyirenda Eileen Obe Reginald Obiakor Abraham Oduro Solomon F Ofori-Acquah Okechukwu Ogah Stephen Ogendo Kwaku Ohene-Frempong Akinlolu Ojo Timothy Olanrewaju John Oli Charlotte Osafo Odile Ouwe Missi Oukem-Boyer Bruce Ovbiagele Andrew Owen Mayowa Ojo Owolabi Lukman Owolabi Ellis Owusu-Dabo Guillaume Pare Rulan Parekh Hugh G Patterton Margaret B Penno Jane Peterson Rembert Pieper Jacob Plange-Rhule Martin Pollak Julia Puzak Rajkumar S Ramesar Michele Ramsay Rebekah Rasooly Shiksha Reddy Pardis C Sabeti Kwamena Sagoe Tunde Salako Oumar Samassékou Manjinder S Sandhu Osman Sankoh Fred Stephen Sarfo Marie Sarr Gasnat Shaboodien Issa Sidibe Gustave Simo Martin Simuunza Liam Smeeth Eugene Sobngwi Himla Soodyall Hermann Sorgho Oumou Sow Bah Sudha Srinivasan Dan J Stein Ezra S Susser Carmen Swanepoel Godfred Tangwa Andrew Tareila Ozlem Tastan Bishop Bamidele Tayo Nicki Tiffin Halidou Tinto Ekaete Tobin Stephen Meir Tollman Mahamadou Traoré Marsha J Treadwell Jennifer Troyer Masego Tsimako-Johnstone Vincent Tukei Ifeoma Ulasi Nzovu Ulenga Beverley van Rooyen Ablo Prudence Wachinou Salina P Waddy Alisha Wade Misaki Wayengera James Whitworth Louise Wideroff Cheryl A Winkler Sarah Winnicki Ambroise Wonkam Mengistu Yewondwos Tadase sen Nathan Yozwiak Heather Zar

Science 2014 Jun;344(6190):1346-8

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http://dx.doi.org/10.1126/science.1251546DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138491PMC
June 2014

A comparative analysis of trypanosomatid SNARE proteins.

Parasitol Int 2014 Apr 22;63(2):341-8. Epub 2013 Nov 22.

South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.parint.2013.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3979113PMC
April 2014

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

PLoS Negl Trop Dis 2014 Apr 24;8(4):e2624. Epub 2014 Apr 24.

Vector, Environment and Society Unit, Tropical Diseases Research (TDR), World Health Organization, Geneva, Switzerland.

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http://dx.doi.org/10.1371/journal.pntd.0002624DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998789PMC
April 2014

Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans.

PLoS Negl Trop Dis 2014 Apr 24;8(4):e2663. Epub 2014 Apr 24.

Molecular Biology and Bioinformatics Unit, International Center of Insect Physiology and Ecology (icipe), Nairobi, Kenya.

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http://dx.doi.org/10.1371/journal.pntd.0002663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998910PMC
April 2014

Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.

Biol Reprod 2014 Feb 27;90(2):45. Epub 2014 Feb 27.

Reproductive Genomics Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore.

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http://dx.doi.org/10.1095/biolreprod.113.110874DOI Listing
February 2014

Towards inferring the global movement of beak and feather disease virus.

Virology 2014 Feb 20;450-451:24-33. Epub 2013 Dec 20.

Electron Microscope Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch, Cape Town 7701, South Africa; School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand; Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand.

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http://dx.doi.org/10.1016/j.virol.2013.11.033DOI Listing
February 2014

A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.

Front Genet 2014 12;5:17. Epub 2014 Feb 12.

South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape Bellville, South Africa.

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http://dx.doi.org/10.3389/fgene.2014.00017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3921913PMC
February 2014

The African coelacanth genome provides insights into tetrapod evolution.

Nature 2013 Apr;496(7445):311-6

Molecular Genetics Program, Benaroya Research Institute, Seattle, Washington 98101, USA.

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http://dx.doi.org/10.1038/nature12027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633110PMC
April 2013

DAMPD: a manually curated antimicrobial peptide database.

Nucleic Acids Res 2012 Jan 21;40(Database issue):D1108-12. Epub 2011 Nov 21.

South African National Bioinformatics Institute, The University of the Western Cape, 7535 Bellville, South Africa.

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http://dx.doi.org/10.1093/nar/gkr1063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244992PMC
January 2012

DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility.

Reprod Toxicol 2012 Jan 17;33(1):99-105. Epub 2011 Dec 17.

Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1016/j.reprotox.2011.12.007DOI Listing
January 2012

HCVpro: hepatitis C virus protein interaction database.

Infect Genet Evol 2011 Dec 9;11(8):1971-7. Epub 2011 Sep 9.

South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Modderdam Road, Bellville 7535, Cape Town, South Africa.

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http://dx.doi.org/10.1016/j.meegid.2011.09.001DOI Listing
December 2011

Evolutionary genomics of Glossina morsitans immune-related CLIP domain serine proteases and serine protease inhibitors.

Infect Genet Evol 2011 Jun 3;11(4):740-5. Epub 2010 Nov 3.

South African National Bioinformatics Institute, University of the Western Cape, Modderdam Road, Bellville, Cape Town, South Africa.

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https://linkinghub.elsevier.com/retrieve/pii/S15671348100028
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http://dx.doi.org/10.1016/j.meegid.2010.10.006DOI Listing
June 2011

Dragon exploratory system on hepatitis C virus (DESHCV).

Infect Genet Evol 2011 Jun 29;11(4):734-9. Epub 2010 Dec 29.

South African National Bioinformatics Institute, University of the Western Cape, Modderdam Road, Bellville, Cape Town, South Africa.

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http://dx.doi.org/10.1016/j.meegid.2010.12.006DOI Listing
June 2011

DDPC: Dragon Database of Genes associated with Prostate Cancer.

Nucleic Acids Res 2011 Jan 29;39(Database issue):D980-5. Epub 2010 Sep 29.

South African National Bioinformatics Institute, University of the Western Cape, Private Bag-X17, Modderdam Road, Bellville, Cape Town, South Africa.

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http://dx.doi.org/10.1093/nar/gkq849DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013759PMC
January 2011

Expansion mechanisms and functional annotations of hypothetical genes in the rice genome.

Plant Physiol 2009 Aug 17;150(4):1997-2008. Epub 2009 Jun 17.

Rice Functional Genomics Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.109.139402
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http://dx.doi.org/10.1104/pp.109.139402DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719134PMC
August 2009

DDEC: Dragon database of genes implicated in esophageal cancer.

BMC Cancer 2009 Jul 6;9:219. Epub 2009 Jul 6.

South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa.

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http://dx.doi.org/10.1186/1471-2407-9-219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2711974PMC
July 2009

Database for exploration of functional context of genes implicated in ovarian cancer.

Nucleic Acids Res 2009 Jan 12;37(Database issue):D820-3. Epub 2008 Sep 12.

South African National Bioinformatics Institute, University of the Western Cape, Private Bag- X17, Modderdam Road, Bellville, Cape Town, South Africa.

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http://dx.doi.org/10.1093/nar/gkn593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686485PMC
January 2009

DDESC: Dragon database for exploration of sodium channels in human.

BMC Genomics 2008 Dec 20;9:622. Epub 2008 Dec 20.

South African National Bioinformatics Institute, University of the Western Cape, Private Bag- X17, Modderdam Road, Bellville, Cape Town 7535, South Africa.

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http://dx.doi.org/10.1186/1471-2164-9-622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631582PMC
December 2008

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

BMC Bioinformatics 2006 Dec 18;7 Suppl 5:S2. Epub 2006 Dec 18.

Computational Biology Group, Temasek Life Sciences Laboratory, Singapore.

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http://dx.doi.org/10.1186/1471-2105-7-S5-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1764476PMC
December 2006

Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage.

Comp Biochem Physiol Part D Genomics Proteomics 2006 Mar 12;1(1):13-9. Epub 2005 Sep 12.

Institute of Molecular and Cell Biology, 61 Biopolis Drive, Singapore 138673, Singapore.

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http://dx.doi.org/10.1016/j.cbd.2005.06.001DOI Listing
March 2006

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes.

Genome Res 2004 Jul 14;14(7):1248-57. Epub 2004 Jun 14.

Institute of Molecular and Cell Biology, Singapore 117609.

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http://dx.doi.org/10.1101/gr.2400004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC442139PMC
July 2004

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes.

Mol Biol Evol 2004 Jun 10;21(6):1146-51. Epub 2004 Mar 10.

Institute of Molecular and Cell Biology, Singapore.

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http://dx.doi.org/10.1093/molbev/msh114DOI Listing
June 2004

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis.

Proc Natl Acad Sci U S A 2003 Feb 23;100(3):1084-8. Epub 2003 Jan 23.

Institute of Molecular and Cell Biology, 30 Medical Drive, Singapore 117609.

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http://dx.doi.org/10.1073/pnas.0237317100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC298730PMC
February 2003

Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering.

J Comput Chem 2002 May;23(7):755-7

SGI, 655E Lone Oak Drive, Eagan, Minnesota 55121, USA.

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http://dx.doi.org/10.1002/jcc.10025DOI Listing
May 2002