Alain Viari

Alain Viari

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Alain Viari

Alain Viari

Publications by authors named "Alain Viari"

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Toll-like receptor 3 downregulation is an escape mechanism from apoptosis during hepatocarcinogenesis.

J Hepatol 2019 Oct 18;71(4):763-772. Epub 2019 Jun 18.

INSERM, U1052, Cancer Research Center of Lyon (CRCL), Université de Lyon (UCBL1), CNRS UMR_5286, Centre Léon Bérard, Lyon, France; Hospices Civils de Lyon, Laboratoire d'Anatomie et Cytologie Pathologiques, Centre Hospitalier Lyon Sud, Pierre Bénite, France. Electronic address:

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http://dx.doi.org/10.1016/j.jhep.2019.05.031DOI Listing
October 2019

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2019 02;566(7742):E1

Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.

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http://www.nature.com/articles/s41586-019-0883-2
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http://dx.doi.org/10.1038/s41586-019-0883-2DOI Listing
February 2019

Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.

Eur Urol 2019 01 21;75(1):11-15. Epub 2018 Sep 21.

CeRePP, Paris, France; Sorbonne Université, GRC n(∘)5, ONCOTYPE-URO, Paris, France; Assistance Publique Hôpitaux de Paris, Department of Urology, Academic Hospital Paris Est, Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.eururo.2018.08.026DOI Listing
January 2019

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes.

BMC Genomics 2019 Jan 17;20(1):56. Epub 2019 Jan 17.

Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35042, Rennes cedex, France.

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http://dx.doi.org/10.1186/s12864-019-5431-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6337836PMC
January 2019

[Contribution and challenges of Big Data in oncology].

Bull Cancer 2017 Mar 25;104(3):281-287. Epub 2016 Nov 25.

Université Lyon, université Claude-Bernard Lyon 1, centre Léon-Bérard, centre de recherche en cancérologie de Lyon, CNRS 5286, Inserm 1052, 69008 Lyon, France.

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http://dx.doi.org/10.1016/j.bulcan.2016.10.020DOI Listing
March 2017

A phenotypic and mechanistic perspective on heterogeneity of HER2-positive breast cancers.

Mol Cell Oncol 2016 12;3(6):e1232186. Epub 2016 Sep 12.

Synergie Lyon Cancer, Plateforme de Bioinformatique 'Gilles Thomas' Centre Léon Bérard, Lyon, France; INRIA Grenoble-Rhône-Alpes, Montbonnot-Saint Martin, France.

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http://dx.doi.org/10.1080/23723556.2016.1232186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5160388PMC
September 2016

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2016 06 2;534(7605):47-54. Epub 2016 May 2.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature17676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910866PMC
June 2016

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia.

Infect Genet Evol 2013 Apr 2;15:59-68. Epub 2011 Jul 2.

Institut Pasteur in Cambodia, Réseau International des Instituts Pasteur, 5 Monivong Boulevard, PO Box 983, Phnom Penh, Cambodia.

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http://dx.doi.org/10.1016/j.meegid.2011.06.019DOI Listing
April 2013

Biased mutational pattern and quasispecies hypothesis in H5N1 virus.

Infect Genet Evol 2013 Apr 29;15:69-76. Epub 2011 Oct 29.

Virology Unit, Institut Pasteur in Cambodia, Réseau International des Instituts Pasteur, 5 Monivong blvd, PO Box 983, Phnom Penh, Cambodia.

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https://linkinghub.elsevier.com/retrieve/pii/S15671348110037
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http://dx.doi.org/10.1016/j.meegid.2011.10.019DOI Listing
April 2013

Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters.

Infect Genet Evol 2013 Apr 5;15:77-86. Epub 2012 Jun 5.

Institut Pasteur in Cambodia, Réseau International des Instituts Pasteur, 5 Monivong Boulevard, PO Box 983, Phnom Penh, Cambodia.

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http://dx.doi.org/10.1016/j.meegid.2012.05.012DOI Listing
April 2013

[Big Data in biology].

Authors:
Alain Viari

Med Sci (Paris) 2012 Dec 21;28(12):1027-8. Epub 2012 Dec 21.

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http://dx.doi.org/10.1051/medsci/20122812001DOI Listing
December 2012

UniPathway: a resource for the exploration and annotation of metabolic pathways.

Nucleic Acids Res 2012 Jan 18;40(Database issue):D761-9. Epub 2011 Nov 18.

Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1093/nar/gkr1023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245108PMC
January 2012

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.

Nucleic Acids Res 2011 Nov 19;39(21):e145. Epub 2011 Sep 19.

Laboratoire d'Ecologie Alpine, CNRS UMR 5553 2233, Université Joseph Fourrier, BP 53, 38041 Grenoble Cedex-9, France.

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https://academic.oup.com/nar/article/39/21/e145/1105558
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http://dx.doi.org/10.1093/nar/gkr732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3241669PMC
November 2011

Bacterial syntenies: an exact approach with gene quorum.

BMC Bioinformatics 2011 May 24;12:193. Epub 2011 May 24.

INRIA Grenoble-Rhône-Alpes, Team BAMBOO, 655 Avenue de l'Europe, 38334 Montbonnot Cedex, France.

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http://dx.doi.org/10.1186/1471-2105-12-193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121647PMC
May 2011

Emergence and potential of high-throughput and integrative approaches in pathology.

Ann N Y Acad Sci 2008 Dec;1149:62-5

Cirad, TA A-15/G, Campus International de Baillarguet, Montpellier, France.

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http://dx.doi.org/10.1196/annals.1428.060DOI Listing
December 2008

Ehrlichia ruminantium: genomic and evolutionary features.

Trends Parasitol 2007 Sep 24;23(9):414-9. Epub 2007 Jul 24.

Centre de coopération internationale en recherche agronomique pour le développement (Cirad), TA30/G, Campus International de Baillarguet, 34398 Montpellier Cedex 05, France.

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http://dx.doi.org/10.1016/j.pt.2007.07.007DOI Listing
September 2007

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

Bioinformatics 2007 Jan 11;23(1):119-21. Epub 2006 Oct 11.

Atelier de Bioinformatique, Université Pierre et Marie Curie-Paris 6 12, rue Cuvier, 75005 Paris, France.

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http://dx.doi.org/10.1093/bioinformatics/btl519DOI Listing
January 2007

Genepi: a blackboard framework for genome annotation.

BMC Bioinformatics 2006 Oct 12;7:450. Epub 2006 Oct 12.

GENOME express, Meylan, France.

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http://dx.doi.org/10.1186/1471-2105-7-450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1626490PMC
October 2006

Comparative genomics of three strains of Ehrlichia ruminantium: a review.

Ann N Y Acad Sci 2006 Oct;1081:417-33

CIRAD, Emvt Department, TA30/G, Campus International de Baillarguet, 34398 Montpellier Cedex 5, France.

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http://dx.doi.org/10.1196/annals.1373.061DOI Listing
October 2006

Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.

Bioinformatics 2005 Dec 10;21(23):4209-15. Epub 2005 Oct 10.

INRIA Rhône-Alpes, HELIX Group 655 avenue de l'Europe, 38334 Montbonnot Cedex, France.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti711DOI Listing
December 2005

Ab initio reconstruction of metabolic pathways.

Bioinformatics 2003 Oct;19 Suppl 2:ii26-34

LSR-IMAG, Saint Martin d'Hères Cedex, France.

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http://dx.doi.org/10.1093/bioinformatics/btg1055DOI Listing
October 2003

Integration of data and methods for genome analysis.

Curr Opin Drug Discov Devel 2003 May;6(3):346-52

Hybrigenics 3-5 Impasse Reille, 75014 Paris, France.

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May 2003