Publications by authors named "Alain Viari"

49Publications

Acquired somatic MMR deficiency is a major cause of MSI tumor in patients suspected for "Lynch-like syndrome" including young patients.

Eur J Hum Genet 2020 Dec 5. Epub 2020 Dec 5.

Centre Léon Bérard, Laboratory of constitutional genetics for frequent cancer HCL-CLB, 69008, Lyon, France.

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December 2020

CDYL2 Epigenetically Regulates MIR124 to Control NF-κB/STAT3-Dependent Breast Cancer Cell Plasticity.

iScience 2020 Jun 6;23(6):101141. Epub 2020 May 6.

Université de Lyon, Université Claude Bernard Lyon 1, INSERM 1052, CNRS 5286, Centre Léon Bérard, Cancer Research Center of Lyon, Lyon, France; Centre de Recherche en Cancérologie de Lyon (CRCL), Centre Léon Bérard, Epigenetics and Cancer Team, Cheney A, 5e étage, 28 rue Laennec, Lyon Cedex 08 69373, France. Electronic address:

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June 2020

Actualités en recherche en oncologie : l’essentiel du 4 Symposium International 2019 du Centre de Recherche en Cancérologie de Lyon.

Bull Cancer 2020 Jan 9;107(1):136-140. Epub 2020 Jan 9.

Univ Lyon, université Claude-Bernard Lyon 1, Inserm 1052, CNRS 5286, centre Léon-Bérard, centre de recherche en cancérologie de Lyon, 28, rue Laennec, Lyon, France. Electronic address:

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January 2020

Corrigendum to "Toll-like receptor 3 downregulation is an escape mechanism from apoptosis during hepatocarcinogenesis" [J Hepatol 71 (2019) 763-772].

J Hepatol 2020 Mar 25;72(3):594. Epub 2019 Nov 25.

INSERM, U1052, Cancer Research Center of Lyon (CRCL), Université de Lyon (UCBL1), CNRS UMR_5286, Centre Léon Bérard, Lyon, France; Hospices Civils de Lyon, Laboratoire d'Anatomie et Cytologie Pathologiques, Centre Hospitalier Lyon Sud, Pierre Bénite, France. Electronic address:

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March 2020

Toll-like receptor 3 downregulation is an escape mechanism from apoptosis during hepatocarcinogenesis.

J Hepatol 2019 10 18;71(4):763-772. Epub 2019 Jun 18.

INSERM, U1052, Cancer Research Center of Lyon (CRCL), Université de Lyon (UCBL1), CNRS UMR_5286, Centre Léon Bérard, Lyon, France; Hospices Civils de Lyon, Laboratoire d'Anatomie et Cytologie Pathologiques, Centre Hospitalier Lyon Sud, Pierre Bénite, France. Electronic address:

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October 2019

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2019 02;566(7742):E1

Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.

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February 2019

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes.

BMC Genomics 2019 Jan 17;20(1):56. Epub 2019 Jan 17.

Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35042, Rennes cedex, France.

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January 2019

Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.

Eur Urol 2019 01 21;75(1):11-15. Epub 2018 Sep 21.

CeRePP, Paris, France; Sorbonne Université, GRC n(∘)5, ONCOTYPE-URO, Paris, France; Assistance Publique Hôpitaux de Paris, Department of Urology, Academic Hospital Paris Est, Paris, France. Electronic address:

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January 2019

A phenotypic and mechanistic perspective on heterogeneity of HER2-positive breast cancers.

Mol Cell Oncol 2016 12;3(6):e1232186. Epub 2016 Sep 12.

Synergie Lyon Cancer, Plateforme de Bioinformatique 'Gilles Thomas' Centre Léon Bérard, Lyon, France; INRIA Grenoble-Rhône-Alpes, Montbonnot-Saint Martin, France.

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September 2016

[Contribution and challenges of Big Data in oncology].

Bull Cancer 2017 Mar 25;104(3):281-287. Epub 2016 Nov 25.

Université Lyon, université Claude-Bernard Lyon 1, centre Léon-Bérard, centre de recherche en cancérologie de Lyon, CNRS 5286, Inserm 1052, 69008 Lyon, France.

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March 2017

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2016 06 2;534(7605):47-54. Epub 2016 May 2.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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June 2016

Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito.

Biol Lett 2014 Dec;10(12):20140716

Université Grenoble-Alpes, Laboratoire d'Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France CNRS, Laboratoire d'Ecologie Alpine UMR 5553, BP53, Grenoble 38041, France.

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December 2014

[Big Data in biology].

Authors:
Alain Viari

Med Sci (Paris) 2012 Dec 21;28(12):1027-8. Epub 2012 Dec 21.

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December 2012

UniPathway: a resource for the exploration and annotation of metabolic pathways.

Nucleic Acids Res 2012 Jan 18;40(Database issue):D761-9. Epub 2011 Nov 18.

Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.

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January 2012

Biased mutational pattern and quasispecies hypothesis in H5N1 virus.

Infect Genet Evol 2013 Apr 29;15:69-76. Epub 2011 Oct 29.

Virology Unit, Institut Pasteur in Cambodia, Réseau International des Instituts Pasteur, 5 Monivong blvd, PO Box 983, Phnom Penh, Cambodia.

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April 2013

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.

Nucleic Acids Res 2011 Nov 19;39(21):e145. Epub 2011 Sep 19.

Laboratoire d'Ecologie Alpine, CNRS UMR 5553 2233, Université Joseph Fourrier, BP 53, 38041 Grenoble Cedex-9, France.

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November 2011

Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia.

Infect Genet Evol 2013 Apr 2;15:59-68. Epub 2011 Jul 2.

Institut Pasteur in Cambodia, Réseau International des Instituts Pasteur, 5 Monivong Boulevard, PO Box 983, Phnom Penh, Cambodia.

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April 2013

Bacterial syntenies: an exact approach with gene quorum.

BMC Bioinformatics 2011 May 24;12:193. Epub 2011 May 24.

INRIA Grenoble-Rhône-Alpes, Team BAMBOO, 655 Avenue de l'Europe, 38334 Montbonnot Cedex, France.

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May 2011

Emergence and potential of high-throughput and integrative approaches in pathology.

Ann N Y Acad Sci 2008 Dec;1149:62-5

Cirad, TA A-15/G, Campus International de Baillarguet, Montpellier, France.

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December 2008

Ehrlichia ruminantium: genomic and evolutionary features.

Trends Parasitol 2007 Sep 24;23(9):414-9. Epub 2007 Jul 24.

Centre de coopération internationale en recherche agronomique pour le développement (Cirad), TA30/G, Campus International de Baillarguet, 34398 Montpellier Cedex 05, France.

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September 2007

Comparative genomics of three strains of Ehrlichia ruminantium: a review.

Ann N Y Acad Sci 2006 Oct;1081:417-33

CIRAD, Emvt Department, TA30/G, Campus International de Baillarguet, 34398 Montpellier Cedex 5, France.

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October 2006

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

Bioinformatics 2007 Jan 11;23(1):119-21. Epub 2006 Oct 11.

Atelier de Bioinformatique, Université Pierre et Marie Curie-Paris 6 12, rue Cuvier, 75005 Paris, France.

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January 2007

Genepi: a blackboard framework for genome annotation.

BMC Bioinformatics 2006 Oct 12;7:450. Epub 2006 Oct 12.

GENOME express, Meylan, France.

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October 2006

Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.

Bioinformatics 2005 Dec 10;21(23):4209-15. Epub 2005 Oct 10.

INRIA Rhône-Alpes, HELIX Group 655 avenue de l'Europe, 38334 Montbonnot Cedex, France.

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December 2005

Ab initio reconstruction of metabolic pathways.

Bioinformatics 2003 Oct;19 Suppl 2:ii26-34

LSR-IMAG, Saint Martin d'Hères Cedex, France.

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October 2003

Integration of data and methods for genome analysis.

Curr Opin Drug Discov Devel 2003 May;6(3):346-52

Hybrigenics 3-5 Impasse Reille, 75014 Paris, France.

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May 2003