Publications Authored by Adrian Ally

The Genome of the Northern Sea Otter (Enhydra lutris kenyoni).

Genes (Basel) 2017 Dec 11;8(12). Epub 2017 Dec 11.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4E6, Canada.

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http://dx.doi.org/10.3390/genes8120379	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748697	PMC

December 2017

The Genome of the Beluga Whale (Delphinapterus leucas).

Genes (Basel) 2017 Dec 11;8(12). Epub 2017 Dec 11.

Vancouver Aquarium, Vancouver, BC V6G 3E2, Canada.

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http://dx.doi.org/10.3390/genes8120378	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748696	PMC

December 2017

Spatial heterogeneity in medulloblastoma.

Authors:

A Sorana Morrissy Florence M G Cavalli Marc Remke Vijay Ramaswamy David J H Shih Borja L Holgado Hamza Farooq Laura K Donovan Livia Garzia Sameer Agnihotri Erin N Kiehna Eloi Mercier Chelsea Mayoh Simon Papillon-Cavanagh Hamid Nikbakht Tenzin Gayden Jonathon Torchia Daniel Picard Diana M Merino Maria Vladoiu Betty Luu Xiaochong Wu Craig Daniels Stuart Horswell Yuan Yao Thompson Volker Hovestadt Paul A Northcott David T W Jones John Peacock Xin Wang Stephen C Mack Jüri Reimand Steffen Albrecht Adam M Fontebasso Nina Thiessen Yisu Li Jacqueline E Schein Darlene Lee Rebecca Carlsen Michael Mayo Kane Tse Angela Tam Noreen Dhalla Adrian Ally Eric Chuah Young Cheng Patrick Plettner Haiyan I Li Richard D Corbett Tina Wong William Long James Loukides Pawel Buczkowicz Cynthia E Hawkins Uri Tabori Brian R Rood John S Myseros Roger J Packer Andrey Korshunov Peter Lichter Marcel Kool Stefan M Pfister Ulrich Schüller Peter Dirks Annie Huang Eric Bouffet James T Rutka Gary D Bader Charles Swanton Yusanne Ma Richard A Moore Andrew J Mungall Jacek Majewski Steven J M Jones Sunit Das David Malkin Nada Jabado Marco A Marra Michael D Taylor

Nat Genet 2017 May 10;49(5):780-788. Epub 2017 Apr 10.

Developmental &Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/ng.3838	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553617	PMC

May 2017

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

Authors:

W Marston Linehan Paul T Spellman Christopher J Ricketts Chad J Creighton Suzanne S Fei Caleb Davis David A Wheeler Bradley A Murray Laura Schmidt Cathy D Vocke Myron Peto Abu Amar M Al Mamun Eve Shinbrot Anurag Sethi Samira Brooks W Kimryn Rathmell Angela N Brooks Katherine A Hoadley A Gordon Robertson Denise Brooks Reanne Bowlby Sara Sadeghi Hui Shen Daniel J Weisenberger Moiz Bootwalla Stephen B Baylin Peter W Laird Andrew D Cherniack Gordon Saksena Scott Haake Jun Li Han Liang Yiling Lu Gordon B Mills Rehan Akbani Mark D M Leiserson Benjamin J Raphael Pavana Anur Donald Bottaro Laurence Albiges Nandita Barnabas Toni K Choueiri Bogdan Czerniak Andrew K Godwin A Ari Hakimi Thai H Ho James Hsieh Michael Ittmann William Y Kim Bhavani Krishnan Maria J Merino Kenna R Mills Shaw Victor E Reuter Ed Reznik Carl S Shelley Brian Shuch Sabina Signoretti Ramaprasad Srinivasan Pheroze Tamboli George Thomas Satish Tickoo Kenneth Burnett Daniel Crain Johanna Gardner Kevin Lau David Mallery Scott Morris Joseph D Paulauskis Robert J Penny Candace Shelton W Troy Shelton Mark Sherman Eric Thompson Peggy Yena Melissa T Avedon Jay Bowen Julie M Gastier-Foster Mark Gerken Kristen M Leraas Tara M Lichtenberg Nilsa C Ramirez Tracie Santos Lisa Wise Erik Zmuda John A Demchok Ina Felau Carolyn M Hutter Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean C Zenklusen Jiashan Zhang Brenda Ayala Julien Baboud Sudha Chudamani Jia Liu Laxmi Lolla Rashi Naresh Todd Pihl Qiang Sun Yunhu Wan Ye Wu Adrian Ally Miruna Balasundaram Saianand Balu Rameen Beroukhim Tom Bodenheimer Christian Buhay Yaron S N Butterfield Rebecca Carlsen Scott L Carter Hsu Chao Eric Chuah Amanda Clarke Kyle R Covington Mahmoud Dahdouli Ninad Dewal Noreen Dhalla Harsha V Doddapaneni Jennifer A Drummond Stacey B Gabriel Richard A Gibbs Ranabir Guin Walker Hale Alicia Hawes D Neil Hayes Robert A Holt Alan P Hoyle Stuart R Jefferys Steven J M Jones Corbin D Jones Divya Kalra Christie Kovar Lora Lewis Jie Li Yussanne Ma Marco A Marra Michael Mayo Shaowu Meng Matthew Meyerson Piotr A Mieczkowski Richard A Moore Donna Morton Lisle E Mose Andrew J Mungall Donna Muzny Joel S Parker Charles M Perou Jeffrey Roach Jacqueline E Schein Steven E Schumacher Yan Shi Janae V Simons Payal Sipahimalani Tara Skelly Matthew G Soloway Carrie Sougnez Angela Tam Donghui Tan Nina Thiessen Umadevi Veluvolu Min Wang Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Jane Zhou Jason Bedford Fengju Chen Yao Fu Mark Gerstein David Haussler Katayoon Kasaian Phillip Lai Shiyun Ling Amie Radenbaugh David Van Den Berg John N Weinstein Jingchun Zhu Monique Albert Iakovina Alexopoulou Jeremiah J Andersen J Todd Auman John Bartlett Sheldon Bastacky Julie Bergsten Michael L Blute Lori Boice Roni J Bollag Jeff Boyd Erik Castle Ying-Bei Chen John C Cheville Erin Curley Benjamin Davies April DeVolk Rajiv Dhir Laura Dike John Eckman Jay Engel Jodi Harr Ronald Hrebinko Mei Huang Lori Huelsenbeck-Dill Mary Iacocca Bruce Jacobs Michael Lobis Jodi K Maranchie Scott McMeekin Jerome Myers Joel Nelson Jeremy Parfitt Anil Parwani Nicholas Petrelli Brenda Rabeno Somak Roy Andrew L Salner Joel Slaton Melissa Stanton R Houston Thompson Leigh Thorne Kelinda Tucker Paul M Weinberger Cynthia Winemiller Leigh Anne Zach Rosemary Zuna

N Engl J Med 2016 Jan 4;374(2):135-45. Epub 2015 Nov 4.

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https://www.genome.gov/Multimedia/Slides/TCGA4/06_Linehan.pd	Web Search
http://www.nejm.org/doi/abs/10.1056/NEJMoa1505917	Publisher Site
http://dx.doi.org/10.1056/NEJMoa1505917	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775252	PMC

January 2016

Divergent clonal selection dominates medulloblastoma at recurrence.

Authors:

A Sorana Morrissy Livia Garzia David J H Shih Scott Zuyderduyn Xi Huang Patryk Skowron Marc Remke Florence M G Cavalli Vijay Ramaswamy Patricia E Lindsay Salomeh Jelveh Laura K Donovan Xin Wang Betty Luu Kory Zayne Yisu Li Chelsea Mayoh Nina Thiessen Eloi Mercier Karen L Mungall Yusanne Ma Kane Tse Thomas Zeng Karey Shumansky Andrew J L Roth Sohrab Shah Hamza Farooq Noriyuki Kijima Borja L Holgado John J Y Lee Stuart Matan-Lithwick Jessica Liu Stephen C Mack Alex Manno K A Michealraj Carolina Nor John Peacock Lei Qin Juri Reimand Adi Rolider Yuan Y Thompson Xiaochong Wu Trevor Pugh Adrian Ally Mikhail Bilenky Yaron S N Butterfield Rebecca Carlsen Young Cheng Eric Chuah Richard D Corbett Noreen Dhalla An He Darlene Lee Haiyan I Li William Long Michael Mayo Patrick Plettner Jenny Q Qian Jacqueline E Schein Angela Tam Tina Wong Inanc Birol Yongjun Zhao Claudia C Faria José Pimentel Sofia Nunes Tarek Shalaby Michael Grotzer Ian F Pollack Ronald L Hamilton Xiao-Nan Li Anne E Bendel Daniel W Fults Andrew W Walter Toshihiro Kumabe Teiji Tominaga V Peter Collins Yoon-Jae Cho Caitlin Hoffman David Lyden Jeffrey H Wisoff James H Garvin Duncan S Stearns Luca Massimi Ulrich Schüller Jaroslav Sterba Karel Zitterbart Stephanie Puget Olivier Ayrault Sandra E Dunn Daniela P C Tirapelli Carlos G Carlotti Helen Wheeler Andrew R Hallahan Wendy Ingram Tobey J MacDonald Jeffrey J Olson Erwin G Van Meir Ji-Yeoun Lee Kyu-Chang Wang Seung-Ki Kim Byung-Kyu Cho Torsten Pietsch Gudrun Fleischhack Stephan Tippelt Young Shin Ra Simon Bailey Janet C Lindsey Steven C Clifford Charles G Eberhart Michael K Cooper Roger J Packer Maura Massimino Maria Luisa Garre Ute Bartels Uri Tabori Cynthia E Hawkins Peter Dirks Eric Bouffet James T Rutka Robert J Wechsler-Reya William A Weiss Lara S Collier Adam J Dupuy Andrey Korshunov David T W Jones Marcel Kool Paul A Northcott Stefan M Pfister David A Largaespada Andrew J Mungall Richard A Moore Nada Jabado Gary D Bader Steven J M Jones David Malkin Marco A Marra Michael D Taylor

Nature 2016 Jan 13;529(7586):351-7. Epub 2016 Jan 13.

Developmental &Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.

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http://dx.doi.org/10.1038/nature16478	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936195	PMC

January 2016

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Authors:

Daniel J Brat Roel G W Verhaak Kenneth D Aldape W K Alfred Yung Sofie R Salama Lee A D Cooper Esther Rheinbay C Ryan Miller Mark Vitucci Olena Morozova A Gordon Robertson Houtan Noushmehr Peter W Laird Andrew D Cherniack Rehan Akbani Jason T Huse Giovanni Ciriello Laila M Poisson Jill S Barnholtz-Sloan Mitchel S Berger Cameron Brennan Rivka R Colen Howard Colman Adam E Flanders Caterina Giannini Mia Grifford Antonio Iavarone Rajan Jain Isaac Joseph Jaegil Kim Katayoon Kasaian Tom Mikkelsen Bradley A Murray Brian Patrick O'Neill Lior Pachter Donald W Parsons Carrie Sougnez Erik P Sulman Scott R Vandenberg Erwin G Van Meir Andreas von Deimling Hailei Zhang Daniel Crain Kevin Lau David Mallery Scott Morris Joseph Paulauskis Robert Penny Troy Shelton Mark Sherman Peggy Yena Aaron Black Jay Bowen Katie Dicostanzo Julie Gastier-Foster Kristen M Leraas Tara M Lichtenberg Christopher R Pierson Nilsa C Ramirez Cynthia Taylor Stephanie Weaver Lisa Wise Erik Zmuda Tanja Davidsen John A Demchok Greg Eley Martin L Ferguson Carolyn M Hutter Kenna R Mills Shaw Bradley A Ozenberger Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean Claude Zenklusen Brenda Ayala Julien Baboud Sudha Chudamani Mark A Jensen Jia Liu Todd Pihl Rohini Raman Yunhu Wan Ye Wu Adrian Ally J Todd Auman Miruna Balasundaram Saianand Balu Stephen B Baylin Rameen Beroukhim Moiz S Bootwalla Reanne Bowlby Christopher A Bristow Denise Brooks Yaron Butterfield Rebecca Carlsen Scott Carter Lynda Chin Andy Chu Eric Chuah Kristian Cibulskis Amanda Clarke Simon G Coetzee Noreen Dhalla Tim Fennell Sheila Fisher Stacey Gabriel Gad Getz Richard Gibbs Ranabir Guin Angela Hadjipanayis D Neil Hayes Toshinori Hinoue Katherine Hoadley Robert A Holt Alan P Hoyle Stuart R Jefferys Steven Jones Corbin D Jones Raju Kucherlapati Phillip H Lai Eric Lander Semin Lee Lee Lichtenstein Yussanne Ma Dennis T Maglinte Harshad S Mahadeshwar Marco A Marra Michael Mayo Shaowu Meng Matthew L Meyerson Piotr A Mieczkowski Richard A Moore Lisle E Mose Andrew J Mungall Angeliki Pantazi Michael Parfenov Peter J Park Joel S Parker Charles M Perou Alexei Protopopov Xiaojia Ren Jeffrey Roach Thaís S Sabedot Jacqueline Schein Steven E Schumacher Jonathan G Seidman Sahil Seth Hui Shen Janae V Simons Payal Sipahimalani Matthew G Soloway Xingzhi Song Huandong Sun Barbara Tabak Angela Tam Donghui Tan Jiabin Tang Nina Thiessen Timothy Triche David J Van Den Berg Umadevi Veluvolu Scot Waring Daniel J Weisenberger Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Andrew W Xu Lixing Yang Travis I Zack Jianhua Zhang B Arman Aksoy Harindra Arachchi Chris Benz Brady Bernard Daniel Carlin Juok Cho Daniel DiCara Scott Frazer Gregory N Fuller JianJiong Gao Nils Gehlenborg David Haussler David I Heiman Lisa Iype Anders Jacobsen Zhenlin Ju Sol Katzman Hoon Kim Theo Knijnenburg Richard Bailey Kreisberg Michael S Lawrence William Lee Kalle Leinonen Pei Lin Shiyun Ling Wenbin Liu Yingchun Liu Yuexin Liu Yiling Lu Gordon Mills Sam Ng Michael S Noble Evan Paull Arvind Rao Sheila Reynolds Gordon Saksena Zack Sanborn Chris Sander Nikolaus Schultz Yasin Senbabaoglu Ronglai Shen Ilya Shmulevich Rileen Sinha Josh Stuart S Onur Sumer Yichao Sun Natalie Tasman Barry S Taylor Doug Voet Nils Weinhold John N Weinstein Da Yang Kosuke Yoshihara Siyuan Zheng Wei Zhang Lihua Zou Ty Abel Sara Sadeghi Mark L Cohen Jenny Eschbacher Eyas M Hattab Aditya Raghunathan Matthew J Schniederjan Dina Aziz Gene Barnett Wendi Barrett Darell D Bigner Lori Boice Cathy Brewer Chiara Calatozzolo Benito Campos Carlos Gilberto Carlotti Timothy A Chan Lucia Cuppini Erin Curley Stefania Cuzzubbo Karen Devine Francesco DiMeco Rebecca Duell J Bradley Elder Ashley Fehrenbach Gaetano Finocchiaro William Friedman Jordonna Fulop Johanna Gardner Beth Hermes Christel Herold-Mende Christine Jungk Ady Kendler Norman L Lehman Eric Lipp Ouida Liu Randy Mandt Mary McGraw Roger Mclendon Christopher McPherson Luciano Neder Phuong Nguyen Ardene Noss Raffaele Nunziata Quinn T Ostrom Cheryl Palmer Alessandro Perin Bianca Pollo Alexander Potapov Olga Potapova W Kimryn Rathmell Daniil Rotin Lisa Scarpace Cathy Schilero Kelly Senecal Kristen Shimmel Vsevolod Shurkhay Suzanne Sifri Rosy Singh Andrew E Sloan Kathy Smolenski Susan M Staugaitis Ruth Steele Leigh Thorne Daniela P C Tirapelli Andreas Unterberg Mahitha Vallurupalli Yun Wang Ronald Warnick Felicia Williams Yingli Wolinsky Sue Bell Mara Rosenberg Chip Stewart Franklin Huang Jonna L Grimsby Amie J Radenbaugh Jianan Zhang

N Engl J Med 2015 Jun 10;372(26):2481-98. Epub 2015 Jun 10.

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http://www.aocc.org.ar/wp-content/uploads/2015/08/comprehens	Web Search
http://www.nejm.org/doi/abs/10.1056/NEJMoa1402121	Publisher Site
http://dx.doi.org/10.1056/NEJMoa1402121	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530011	PMC

June 2015

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.

Authors:

Timothy J Ley Christopher Miller Li Ding Benjamin J Raphael Andrew J Mungall A Gordon Robertson Katherine Hoadley Timothy J Triche Peter W Laird Jack D Baty Lucinda L Fulton Robert Fulton Sharon E Heath Joelle Kalicki-Veizer Cyriac Kandoth Jeffery M Klco Daniel C Koboldt Krishna-Latha Kanchi Shashikant Kulkarni Tamara L Lamprecht David E Larson Ling Lin Charles Lu Michael D McLellan Joshua F McMichael Jacqueline Payton Heather Schmidt David H Spencer Michael H Tomasson John W Wallis Lukas D Wartman Mark A Watson John Welch Michael C Wendl Adrian Ally Miruna Balasundaram Inanc Birol Yaron Butterfield Readman Chiu Andy Chu Eric Chuah Hye-Jung Chun Richard Corbett Noreen Dhalla Ranabir Guin An He Carrie Hirst Martin Hirst Robert A Holt Steven Jones Aly Karsan Darlene Lee Haiyan I Li Marco A Marra Michael Mayo Richard A Moore Karen Mungall Jeremy Parker Erin Pleasance Patrick Plettner Jacquie Schein Dominik Stoll Lucas Swanson Angela Tam Nina Thiessen Richard Varhol Natasja Wye Yongjun Zhao Stacey Gabriel Gad Getz Carrie Sougnez Lihua Zou Mark D M Leiserson Fabio Vandin Hsin-Ta Wu Frederick Applebaum Stephen B Baylin Rehan Akbani Bradley M Broom Ken Chen Thomas C Motter Khanh Nguyen John N Weinstein Nianziang Zhang Martin L Ferguson Christopher Adams Aaron Black Jay Bowen Julie Gastier-Foster Thomas Grossman Tara Lichtenberg Lisa Wise Tanja Davidsen John A Demchok Kenna R Mills Shaw Margi Sheth Heidi J Sofia Liming Yang James R Downing Greg Eley

N Engl J Med 2013 05 1;368(22):2059-74. Epub 2013 May 1.

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http://dx.doi.org/10.1056/NEJMoa1301689	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767041	PMC

May 2013

The genetic landscape of high-risk neuroblastoma.

Authors:

Trevor J Pugh Olena Morozova Edward F Attiyeh Shahab Asgharzadeh Jun S Wei Daniel Auclair Scott L Carter Kristian Cibulskis Megan Hanna Adam Kiezun Jaegil Kim Michael S Lawrence Lee Lichenstein Aaron McKenna Chandra Sekhar Pedamallu Alex H Ramos Erica Shefler Andrey Sivachenko Carrie Sougnez Chip Stewart Adrian Ally Inanc Birol Readman Chiu Richard D Corbett Martin Hirst Shaun D Jackman Baljit Kamoh Alireza Hadj Khodabakshi Martin Krzywinski Allan Lo Richard A Moore Karen L Mungall Jenny Qian Angela Tam Nina Thiessen Yongjun Zhao Kristina A Cole Maura Diamond Sharon J Diskin Yael P Mosse Andrew C Wood Lingyun Ji Richard Sposto Thomas Badgett Wendy B London Yvonne Moyer Julie M Gastier-Foster Malcolm A Smith Jaime M Guidry Auvil Daniela S Gerhard Michael D Hogarty Steven J M Jones Eric S Lander Stacey B Gabriel Gad Getz Robert C Seeger Javed Khan Marco A Marra Matthew Meyerson John M Maris

Nat Genet 2013 Mar 20;45(3):279-84. Epub 2013 Jan 20.

The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

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http://www.nature.com/articles/ng.2529	Publisher Site
http://dx.doi.org/10.1038/ng.2529	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3682833	PMC