Adina Weinberger

Adina Weinberger

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Adina Weinberger

Adina Weinberger

Publications by authors named "Adina Weinberger"

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34Publications

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Sequence determinants of polyadenylation-mediated regulation.

Genome Res 2019 Oct 17;29(10):1635-1647. Epub 2019 Sep 17.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.

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http://dx.doi.org/10.1101/gr.247312.118DOI Listing
October 2019

Structural variation in the gut microbiome associates with host health.

Nature 2019 04 27;568(7750):43-48. Epub 2019 Mar 27.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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http://www.nature.com/articles/s41586-019-1065-y
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http://dx.doi.org/10.1038/s41586-019-1065-yDOI Listing
April 2019

Systematic interrogation of human promoters.

Genome Res 2019 02 8;29(2):171-183. Epub 2019 Jan 8.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://genome.cshlp.org/lookup/doi/10.1101/gr.236075.118
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http://dx.doi.org/10.1101/gr.236075.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360817PMC
February 2019

Unraveling the determinants of microRNA mediated regulation using a massively parallel reporter assay.

Nat Commun 2018 02 6;9(1):529. Epub 2018 Feb 6.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, 7610001, Rehovot, Israel.

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http://dx.doi.org/10.1038/s41467-018-02980-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802814PMC
February 2018

Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses.

Cell Metab 2017 Jun;25(6):1243-1253.e5

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2017.05.002DOI Listing
June 2017

Systematic Investigation of Transcription Factor Activity in the Context of Chromatin Using Massively Parallel Binding and Expression Assays.

Mol Cell 2017 Feb;65(4):604-617.e6

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.01.007DOI Listing
February 2017

Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.

Genome Res 2017 01 13;27(1):87-94. Epub 2016 Dec 13.

Department of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1101/gr.212316.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5204347PMC
January 2017

Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness.

Cell 2016 Aug 18;166(5):1282-1294.e18. Epub 2016 Aug 18.

Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel; Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.07.024DOI Listing
August 2016

Comparative genetics. Systematic discovery of cap-independent translation sequences in human and viral genomes.

Science 2016 Jan 14;351(6270). Epub 2016 Jan 14.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel. Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1126/science.aad4939DOI Listing
January 2016

Noise in gene expression is coupled to growth rate.

Genome Res 2015 Dec 9;25(12):1893-902. Epub 2015 Sep 9.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel;

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http://genome.cshlp.org/lookup/doi/10.1101/gr.191635.115
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http://dx.doi.org/10.1101/gr.191635.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665010PMC
December 2015

Personalized Nutrition by Prediction of Glycemic Responses.

Cell 2015 Nov;163(5):1079-1094

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel. Electronic address:

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http://www.wisdom.weizmann.ac.il/~/eran/zeevi_cell_2015.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S009286741501481
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http://dx.doi.org/10.1016/j.cell.2015.11.001DOI Listing
November 2015

Unraveling determinants of transcription factor binding outside the core binding site.

Genome Res 2015 Jul 11;25(7):1018-29. Epub 2015 Mar 11.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel;

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http://dx.doi.org/10.1101/gr.185033.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484385PMC
July 2015

Core promoter sequence in yeast is a major determinant of expression level.

Genome Res 2015 Jul 12;25(7):1008-17. Epub 2015 May 12.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, 7610001 Rehovot, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, 7610001 Rehovot, Israel;

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http://dx.doi.org/10.1101/gr.188193.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484384PMC
July 2015

Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters.

Genome Res 2014 Dec 7;24(12):1991-9. Epub 2014 Oct 7.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001, Israel; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, 7610001, Israel

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http://dx.doi.org/10.1101/gr.179259.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248315PMC
December 2014

Promoters maintain their relative activity levels under different growth conditions.

Mol Syst Biol 2013 Oct 29;9:701. Epub 2013 Oct 29.

1] Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel [2] Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel [3] Department of Plant Sciences, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1038/msb.2013.59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817408PMC
October 2013

Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast.

Proc Natl Acad Sci U S A 2013 Jul 5;110(30):E2792-801. Epub 2013 Jul 5.

Departments of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1073/pnas.1222534110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725075PMC
July 2013

Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise.

Genome Res 2013 Jun 12;23(6):966-76. Epub 2013 Feb 12.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1101/gr.149096.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668364PMC
June 2013

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters.

Nat Biotechnol 2012 May 20;30(6):521-30. Epub 2012 May 20.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1038/nbt.2205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3374032PMC
May 2012

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast.

Nat Genet 2012 May 27;44(7):743-50. Epub 2012 May 27.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.

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http://www.nature.com/articles/ng.2305
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http://dx.doi.org/10.1038/ng.2305DOI Listing
May 2012

Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters.

Genome Res 2011 Dec 18;21(12):2114-28. Epub 2011 Oct 18.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1101/gr.119669.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227101PMC
December 2011

On the relation between promoter divergence and gene expression evolution.

Mol Syst Biol 2008 15;4:159. Epub 2008 Jan 15.

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1038/msb4100198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238714PMC
January 2008

Strategy of transcription regulation in the budding yeast.

PLoS One 2007 Feb 28;2(2):e250. Epub 2007 Feb 28.

Department of Molecular Genetics and Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot, Israel.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000250PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1803021PMC
February 2007

A genetic signature of interspecies variations in gene expression.

Nat Genet 2006 Jul 18;38(7):830-4. Epub 2006 Jun 18.

Department of Molecular Genetics, Weizmann Institute of Science, 76100 Rehovot, Israel.

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http://dx.doi.org/10.1038/ng1819DOI Listing
July 2006

Mso1 is a novel component of the yeast exocytic SNARE complex.

J Biol Chem 2005 Oct 8;280(40):34033-41. Epub 2005 Aug 8.

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1074/jbc.M507142200DOI Listing
October 2005

Control of Golgi morphology and function by Sed5 t-SNARE phosphorylation.

Mol Biol Cell 2005 Oct 10;16(10):4918-30. Epub 2005 Aug 10.

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1091/mbc.e05-02-0101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1237093PMC
October 2005

YOS9, the putative yeast homolog of a gene amplified in osteosarcomas, is involved in the endoplasmic reticulum (ER)-Golgi transport of GPI-anchored proteins.

J Biol Chem 2002 Sep 20;277(38):35274-81. Epub 2002 Jun 20.

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://dx.doi.org/10.1074/jbc.M201044200DOI Listing
September 2002

t-SNARE phosphorylation regulates endocytosis in yeast.

Mol Biol Cell 2002 May;13(5):1594-607

Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.

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http://www.molbiolcell.org/doi/10.1091/mbc.01-11-0541
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http://dx.doi.org/10.1091/mbc.01-11-0541DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC111129PMC
May 2002