Publications by authors named "Abhijit Mitra"

71Publications

Estimating Strengths of Individual Hydrogen Bonds in RNA Base Pairs: Toward a Consensus between Different Computational Approaches.

ACS Omega 2019 Apr 23;4(4):7354-7368. Epub 2019 Apr 23.

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, India.

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April 2019

Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis).

BMC Genomics 2019 Jul 29;20(1):617. Epub 2019 Jul 29.

Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830, Tjele, Denmark.

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July 2019

Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies.

RNA 2019 10 17;25(10):1274-1290. Epub 2019 Jul 17.

Computational Biochemistry Laboratory, Department of Chemistry and Centre for Advanced Studies in Chemistry, Panjab University, Chandigarh 160014, India.

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October 2019

Unfolding Transitions of Peripheral Subunit Binding Domains Show Cooperative Behavior.

J Phys Chem B 2019 04 16;123(16):3441-3451. Epub 2019 Apr 16.

Center of Computational Natural Sciences and Bioinformatics (CCNSB) , International Institute of Information Technology (IIIT) , Hyderabad 500032 , India.

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April 2019

Going beyond base-pairs: topology-based characterization of base-multiplets in RNA.

RNA 2019 05 21;25(5):573-589. Epub 2019 Feb 21.

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, India.

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May 2019

Evidence for Hidden Involvement of N3-Protonated Guanine in RNA Structure and Function.

ACS Omega 2019 Jan 9;4(1):699-709. Epub 2019 Jan 9.

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology, Hyderabad (IIIT-H), Gachibowli, Hyderabad 500032, Telangana, India.

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January 2019

Identification of sperm motility markers in bovine transition protein genes.

Reprod Domest Anim 2019 Feb 19;54(2):365-372. Epub 2018 Nov 19.

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute (IVRI), Bareilly, India.

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February 2019

Consequences of Mg binding on the geometry and stability of RNA base pairs.

Phys Chem Chem Phys 2018 Aug;20(34):21934-21948

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, India.

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August 2018

Nucleotide variability of protamine genes influencing bull sperm motility variables.

Anim Reprod Sci 2018 Jun 10;193:126-139. Epub 2018 Apr 10.

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute (IVRI), Izatnagar, Bareilly, 243 122, Uttar Pradesh, India.

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June 2018

Intratesticular injection followed by electroporation allows gene transfer in caprine spermatogenic cells.

Sci Rep 2018 02 16;8(1):3169. Epub 2018 Feb 16.

Genome Analysis Laboratory, Animal Genetics Division, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, UP, India.

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February 2018

How Does Mg Modulate the RNA Folding Mechanism: A Case Study of the G:C W:W Trans Basepair.

Biophys J 2017 Jul 12;113(2):277-289. Epub 2017 May 12.

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad, India. Electronic address:

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July 2017

Short-hairpin Mediated Myostatin Knockdown Resulted in Altered Expression of Myogenic Regulatory Factors with Enhanced Myoblast Proliferation in Fetal Myoblast Cells of Goats.

Anim Biotechnol 2018 Jan 30;29(1):59-67. Epub 2017 Mar 30.

a Genome Analysis Laboratory, Animal Genetics Division , ICAR- Indian Veterinary Research Institute , Izatnagar , Bareilly , India.

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January 2018

Structural landscape of base pairs containing post-transcriptional modifications in RNA.

RNA 2017 06 24;23(6):847-859. Epub 2017 Mar 24.

Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology Hyderabad (IIIT-H), Gachibowli, Hyderabad, Telangana 500032, India.

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June 2017

Climate change-induced salinity variation impacts on a stenoecious mangrove species in the Indian Sundarbans.

Ambio 2017 May 1;46(4):492-499. Epub 2016 Nov 1.

Department of Marine Science, University of Calcutta, 35, B.C. Road, Kolkata, 700019, India.

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May 2017

Effects of point mutations on the thermostability of B. subtilis lipase: investigating nonadditivity.

J Comput Aided Mol Des 2016 10 30;30(10):899-916. Epub 2016 Sep 30.

Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology Hyderabad (IIIT-H), Gachibowli, Hyderabad, 500032, India.

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October 2016