Publications by authors named "Abby F Dernburg"

43Publications

A compartmentalized signaling network mediates crossover control in meiosis.

Elife 2018 03 9;7. Epub 2018 Mar 9.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.

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http://dx.doi.org/10.7554/eLife.30789DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5906097PMC
March 2018

Superresolution microscopy reveals the three-dimensional organization of meiotic chromosome axes in intact tissue.

Proc Natl Acad Sci U S A 2017 06 30;114(24):E4734-E4743. Epub 2017 May 30.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3220;

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http://dx.doi.org/10.1073/pnas.1702312114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5474826PMC
June 2017

The synaptonemal complex has liquid crystalline properties and spatially regulates meiotic recombination factors.

Elife 2017 01 3;6. Epub 2017 Jan 3.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.

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http://dx.doi.org/10.7554/eLife.21455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5268736PMC
January 2017

Meiotic recombination and the crossover assurance checkpoint in Caenorhabditis elegans.

Semin Cell Dev Biol 2016 06 21;54:106-16. Epub 2016 Mar 21.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3220, USA; Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA; California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5082714PMC
http://dx.doi.org/10.1016/j.semcdb.2016.03.014DOI Listing
June 2016

The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans.

Development 2015 Dec 9;142(24):4374-84. Epub 2015 Nov 9.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA Life Sciences Division, Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA

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http://dev.biologists.org/cgi/doi/10.1242/dev.129635
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http://dx.doi.org/10.1242/dev.129635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4689222PMC
December 2015

The Chromosome Axis Mediates Feedback Control of CHK-2 to Ensure Crossover Formation in C. elegans.

Dev Cell 2015 Oct;35(2):247-61

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA; Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA; Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2015.09.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624198PMC
October 2015

Direct Visualization Reveals Kinetics of Meiotic Chromosome Synapsis.

Cell Rep 2015 Mar 12;10(10):1639-1645. Epub 2015 Mar 12.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA; Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA; Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.02.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4565782PMC
March 2015

The chromosome axis controls meiotic events through a hierarchical assembly of HORMA domain proteins.

Dev Cell 2014 Nov 6;31(4):487-502. Epub 2014 Nov 6.

Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0660, USA; Ludwig Institute for Cancer Research, San Diego Branch, San Diego, La Jolla, CA 92093-0660, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2014.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4254552PMC
November 2014

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint.

PLoS Genet 2013 8;9(8):e1003679. Epub 2013 Aug 8.

Department of Molecular and Cell Biology and California Institute for Quantitative Biosciences (QB3), University of California, Berkeley; Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3749324PMC
March 2014

Pushing the (nuclear) envelope into meiosis.

Authors:
Abby F Dernburg

Genome Biol 2013 Mar 27;14(3):110. Epub 2013 Mar 27.

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http://dx.doi.org/10.1186/gb-2013-14-3-110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663112PMC
March 2013

Chromosome pairing and synapsis during Caenorhabditis elegans meiosis.

Curr Opin Cell Biol 2013 Jun 8;25(3):349-56. Epub 2013 Apr 8.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, United States.

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http://dx.doi.org/10.1016/j.ceb.2013.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694717PMC
June 2013

Molecular biology. RNA plays meiotic matchmaker.

Authors:
Abby F Dernburg

Science 2012 May;336(6082):681-2

Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.

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http://dx.doi.org/10.1126/science.1222647DOI Listing
May 2012

Hybridization to tissues on slides or coverslips for whole-mount FISH in Drosophila.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2012 May 1;2012(5). Epub 2012 May 1.

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http://dx.doi.org/10.1101/pdb.prot067322DOI Listing
May 2012

Formaldehyde fixation of Drosophila tissues onto slides for whole-mount FISH.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2012 May 1;2012(5). Epub 2012 May 1.

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http://dx.doi.org/10.1101/pdb.prot067314DOI Listing
May 2012

DOP-PCR amplification of probe DNA for whole-mount FISH in Drosophila.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2012 Mar 1;2012(3):380-4. Epub 2012 Mar 1.

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http://dx.doi.org/10.1101/pdb.prot067306DOI Listing
March 2012

Microdissection of Drosophila polytene chromosomes for DOP-PCR.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2012 Mar 1;2012(3):376-9. Epub 2012 Mar 1.

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http://dx.doi.org/10.1101/pdb.prot067298DOI Listing
March 2012

Dynein-dependent processive chromosome motions promote homologous pairing in C. elegans meiosis.

J Cell Biol 2012 Jan;196(1):47-64

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1083/jcb.201106022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3255982PMC
January 2012

Hybridization to tissues in suspension for whole-mount FISH in Drosophila.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2011 Dec 1;2011(12):1534-7. Epub 2011 Dec 1.

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http://dx.doi.org/10.1101/pdb.prot066902DOI Listing
December 2011

Manual dissection and fixation of Drosophila egg chambers for whole-mount FISH.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2011 Dec 1;2011(12):1531-3. Epub 2011 Dec 1.

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http://dx.doi.org/10.1101/pdb.prot066894DOI Listing
December 2011

Fragmentation and labeling of probe DNA for whole-mount FISH in Drosophila.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2011 Dec 1;2011(12):1527-30. Epub 2011 Dec 1.

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http://dx.doi.org/10.1101/pdb.prot066886DOI Listing
December 2011

Pairing centers recruit a Polo-like kinase to orchestrate meiotic chromosome dynamics in C. elegans.

Dev Cell 2011 Nov 20;21(5):934-47. Epub 2011 Oct 20.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA.

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http://dx.doi.org/10.1016/j.devcel.2011.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343031PMC
November 2011

In situ hybridization to somatic chromosomes in Drosophila.

Authors:
Abby F Dernburg

Cold Spring Harb Protoc 2011 Sep 1;2011(9). Epub 2011 Sep 1.

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http://www.cshprotocols.org/cgi/doi/10.1101/pdb.top065540
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http://dx.doi.org/10.1101/pdb.top065540DOI Listing
September 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

The SUN rises on meiotic chromosome dynamics.

Dev Cell 2009 Nov;17(5):598-605

Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita 565-0871, Japan.

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http://dx.doi.org/10.1016/j.devcel.2009.10.014DOI Listing
November 2009

Cytological analysis of meiosis in Caenorhabditis elegans.

Methods Mol Biol 2009 ;558:171-95

Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1007/978-1-60761-103-5_11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644504PMC
October 2009

Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans.

Nat Cell Biol 2009 Aug 20;11(8):934-42. Epub 2009 Jul 20.

Department of Molecular and Cell Biology, University of California, 470 Stanley Hall, MC 3220, Berkeley CA 94720, USA.

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http://dx.doi.org/10.1038/ncb1904DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001799PMC
August 2009

Old nuclei spring new leaks.

Cell 2009 Jan;136(2):211-2

Howard Hughes Medical Institute, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/j.cell.2009.01.004DOI Listing
January 2009

ZHP-3 acts at crossovers to couple meiotic recombination with synaptonemal complex disassembly and bivalent formation in C. elegans.

PLoS Genet 2008 Oct 24;4(10):e1000235. Epub 2008 Oct 24.

Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.

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http://dx.doi.org/10.1371/journal.pgen.1000235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2567099PMC
October 2008

Prelude to a division.

Annu Rev Cell Dev Biol 2008 ;24:397-424

Department of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1146/annurev.cellbio.23.090506.123245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435778PMC
December 2008

Nuclear architecture--an island no more.

Dev Cell 2007 Mar;12(3):329-34

Lawrence Berkeley National Laboratory and University of California, Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/j.devcel.2007.02.014DOI Listing
March 2007

A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans.

Dev Cell 2006 Dec;11(6):817-29

Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1016/j.devcel.2006.09.020DOI Listing
December 2006

A link between meiotic prophase progression and crossover control.

PLoS Genet 2006 Feb 3;2(2):e12. Epub 2006 Feb 3.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

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http://dx.doi.org/10.1371/journal.pgen.0020012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1359072PMC
February 2006

HIM-8 binds to the X chromosome pairing center and mediates chromosome-specific meiotic synapsis.

Cell 2005 Dec;123(6):1051-63

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/j.cell.2005.09.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435792PMC
December 2005

Chromosome sites play dual roles to establish homologous synapsis during meiosis in C. elegans.

Cell 2005 Dec;123(6):1037-50

Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.cell.2005.09.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435800PMC
December 2005

A conserved checkpoint monitors meiotic chromosome synapsis in Caenorhabditis elegans.

Science 2005 Dec;310(5754):1683-6

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1126/science.1117468DOI Listing
December 2005

Meiosis researchers exchange information in the Alps.

Authors:
Abby F Dernburg

Dev Cell 2003 Nov;5(5):691-3

Life Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 84-171, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/s1534-5807(03)00336-8DOI Listing
November 2003

A chromosome RNAissance.

Cell 2002 Oct;111(2):159-62

Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/s0092-8674(02)01039-5DOI Listing
October 2002

X-chromosome silencing in the germline of C. elegans.

Development 2002 Jan;129(2):479-92

Biology Department, Emory University, Atlanta, GA 30322, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066729PMC
January 2002