Aaron W Miller

Aaron W Miller

UNVERIFIED PROFILE

Are you Aaron W Miller?   Register this Author

Register author
Aaron W Miller

Aaron W Miller

Publications by authors named "Aaron W Miller"

Are you Aaron W Miller?   Register this Author

40Publications

544Reads

5Profile Views

Defining Dysbiosis for a Cluster of Chronic Diseases.

Sci Rep 2019 Sep 9;9(1):12918. Epub 2019 Sep 9.

Glickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, OH, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-019-49452-yDOI Listing
September 2019

Inhibition of urinary stone disease by a multi-species bacterial network ensures healthy oxalate homeostasis.

Kidney Int 2019 Jul 28;96(1):180-188. Epub 2019 Feb 28.

The Stone Centre at VGH, Department of Urologic Sciences, The University of British Columbia, Vancouver, British Columbia, Canada. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.kint.2019.02.012DOI Listing
July 2019

Loss of function dysbiosis associated with antibiotics and high fat, high sugar diet.

ISME J 2019 06 30;13(6):1379-1390. Epub 2019 Jan 30.

Department of Urology, Cleveland Clinic, 9500 Euclid Ave., Cleveland, OH, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41396-019-0357-4DOI Listing
June 2019

Defining Dysbiosis in Patients with Urolithiasis.

Sci Rep 2019 Apr 1;9(1):5425. Epub 2019 Apr 1.

Glickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, OH, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-019-41977-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6443657PMC
April 2019

Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

J Endourol 2018 11 20;32(11):995-1005. Epub 2018 Oct 20.

1 Department of Urology, Cleveland Clinic , Cleveland, Ohio.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/end.2018.0294DOI Listing
November 2018

Response to Lange re: Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

J Endourol 2018 11;32(11):1007

1 Department of Urology, Cleveland Clinic , Cleveland, Ohio.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/end.2018.29049.cabDOI Listing
November 2018

Intestinal Epithelial Cell-Derived LKB1 Suppresses Colitogenic Microbiota.

J Immunol 2018 03 19;200(5):1889-1900. Epub 2018 Jan 19.

Shanghai Institute of Immunology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4049/jimmunol.1700547DOI Listing
March 2018

Modeling time-series data from microbial communities.

ISME J 2017 11 8;11(11):2526-2537. Epub 2017 Aug 8.

Bioinformatics and Computational Biology Program, University of Idaho, Moscow, ID, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ismej.2017.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5649163PMC
November 2017

LRRK2 promotes the activation of NLRC4 inflammasome during Typhimurium infection.

J Exp Med 2017 Oct 18;214(10):3051-3066. Epub 2017 Aug 18.

Shanghai Institute of Immunology, Shanghai Jiao Tong University School of Medicine, Shanghai, China

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1084/jem.20170014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626397PMC
October 2017

Microbiota Diversification and Crash Induced by Dietary Oxalate in the Mammalian Herbivore .

mSphere 2017 Sep-Oct;2(5). Epub 2017 Oct 18.

Department of Biology, University of Utah, Salt Lake City, Utah, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mSphere.00428-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646245PMC
October 2017

The Induction of Oxalate Metabolism Is More Effective with Functional Microbial Communities than with Functional Microbial Species.

mSystems 2017 Sep-Oct;2(5). Epub 2017 Sep 26.

Department of Biology, University of Utah, Salt Lake City, Utah, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mSystems.00088-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613171PMC
September 2017

A multiplex culture system for the long-term growth of fission yeast cells.

Yeast 2017 08 6;34(8):343-355. Epub 2017 Jun 6.

SyntheCell Team, Institute of Genetics and Development of Rennes, CNRS UMR 6290, Rennes, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/yea.3237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5542872PMC
August 2017

Assembly of a Mini-Chemostat Array.

Cold Spring Harb Protoc 2017 Jul 5;2017(7):pdb.prot088997. Epub 2017 Jul 5.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/pdb.prot088997DOI Listing
July 2017

Chemostat Culture for Yeast Physiology and Experimental Evolution.

Cold Spring Harb Protoc 2017 Jul 5;2017(7):pdb.top077610. Epub 2017 Jul 5.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/pdb.top077610DOI Listing
July 2017

Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast.

Genetics 2017 06 26;206(2):1153-1167. Epub 2017 Apr 26.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.116.198895DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499169PMC
June 2017

Differential paralog divergence modulates genome evolution across yeast species.

PLoS Genet 2017 02 14;13(2):e1006585. Epub 2017 Feb 14.

Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1006585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5308817PMC
February 2017

Microbial Community Transplant Results in Increased and Long-Term Oxalate Degradation.

Microb Ecol 2016 08 16;72(2):470-8. Epub 2016 Jun 16.

Department of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00248-016-0800-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5155304PMC
August 2016

Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula.

Appl Environ Microbiol 2016 May 18;82(9):2669-2675. Epub 2016 Apr 18.

Department of Biology, University of Utah, Salt Lake City, Utah, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.00216-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836426PMC
May 2016

Genomic Analysis of ATP Efflux in Saccharomyces cerevisiae.

G3 (Bethesda) 2015 Nov 19;6(1):161-70. Epub 2015 Nov 19.

The Buck Institute for Research on Aging, Novato, California 94945

View Article

Download full-text PDF

Source
http://g3journal.org/lookup/doi/10.1534/g3.115.023267
Publisher Site
http://dx.doi.org/10.1534/g3.115.023267DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704715PMC
November 2015

Intramolecular ring-opening from a CO-derived nucleophile as the origin of selectivity for 5-substituted oxazolidinone from the (salen)Cr-catalyzed [aziridine + CO] coupling.

Chem Sci 2015 Feb 21;6(2):1293-1300. Epub 2014 Nov 21.

Department of Chemistry and the International Institute for Nanotechnology , Northwestern University , 2145 Sheridan Road , Evanston , IL 60208-3113 , USA . Email:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c4sc02785jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811137PMC
February 2015

A low cost, customizable turbidostat for use in synthetic circuit characterization.

ACS Synth Biol 2015 Jan 1;4(1):32-8. Epub 2014 Aug 1.

Department of Electrical Engineering, ‡Department of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/sb500165gDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304434PMC
January 2015

Aspirin overutilization for the primary prevention of cardiovascular disease.

Clin Epidemiol 2014 1;6:433-40. Epub 2014 Dec 1.

Department of Cardiology, Marshfield Clinic, Marshfield, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2147/CLEP.S72032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4259866PMC
December 2014

Herbivorous rodents (Neotoma spp.) harbour abundant and active foregut microbiota.

Environ Microbiol 2014 Sep 23;16(9):2869-78. Epub 2014 Jan 23.

Department of Biology, University of Utah, Salt Lake City, UT, 84112, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1462-2920.12376DOI Listing
September 2014

Development of reusable logic for determination of statin exposure-time from electronic health records.

J Biomed Inform 2014 Jun 15;49:206-12. Epub 2014 Mar 15.

Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, 3500 Camp Bowie Boulevard, Fort Worth, TX 76107, USA.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S15320464140005
Publisher Site
http://dx.doi.org/10.1016/j.jbi.2014.02.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4327888PMC
June 2014

The gastrointestinal tract of the white-throated Woodrat (Neotoma albigula) harbors distinct consortia of oxalate-degrading bacteria.

Appl Environ Microbiol 2014 Mar 20;80(5):1595-601. Epub 2013 Dec 20.

Department of Biology, University of Utah, Salt Lake City, Utah, USA.

View Article

Download full-text PDF

Source
http://aem.asm.org/lookup/doi/10.1128/AEM.03742-13
Publisher Site
http://dx.doi.org/10.1128/AEM.03742-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957601PMC
March 2014

The metabolic and ecological interactions of oxalate-degrading bacteria in the Mammalian gut.

Pathogens 2013 Dec 6;2(4):636-52. Epub 2013 Dec 6.

Department of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/pathogens2040636DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4235702PMC
December 2013

Regional epidemiologic assessment of prevalent periodontitis using an electronic health record system.

Am J Epidemiol 2013 Apr 4;177(7):700-7. Epub 2013 Mar 4.

Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, 1000 North Oak Avenue, Marshfield, WI 54449, USA.

View Article

Download full-text PDF

Source
https://academic.oup.com/aje/article-lookup/doi/10.1093/aje/
Publisher Site
http://dx.doi.org/10.1093/aje/kws293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613126PMC
April 2013

Antibacterial activity of marine and black band disease cyanobacteria against coral-associated bacteria.

Mar Drugs 2011 24;9(10):2089-105. Epub 2011 Oct 24.

Department of Biological Sciences, Florida International University, Miami, FL 33199, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/md9102089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210620PMC
February 2013

Design and use of multiplexed chemostat arrays.

J Vis Exp 2013 Feb 23(72):e50262. Epub 2013 Feb 23.

Department of Genome Sciences, University of Washington, WA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3791/50262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610398PMC
February 2013

Fine structure analysis of black band disease (BBD) infected coral and coral exposed to the BBD toxins microcystin and sulfide.

J Invertebr Pathol 2012 Jan 17;109(1):27-33. Epub 2011 Sep 17.

Department of Biological Sciences, Florida International University, 11200 SW 8th St., Miami, FL 33199, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jip.2011.09.007DOI Listing
January 2012

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.

J Proteome Res 2011 Jul 26;10(7):2896-904. Epub 2011 Apr 26.

Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee 37232-8340, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr200118rDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128668PMC
July 2011

A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals.

FEMS Microbiol Ecol 2011 Feb 26;75(2):231-41. Epub 2010 Nov 26.

Department of Biological Sciences, Florida International University, Miami, FL, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1574-6941.2010.00991.xDOI Listing
February 2011

Fine-structural analysis of black band disease-infected coral reveals boring cyanobacteria and novel bacteria.

Dis Aquat Organ 2011 Feb;93(3):179-90

Department of Biological Sciences, Florida International University, Miami, Florida 33199, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3354/dao02305DOI Listing
February 2011

Sulfide, microcystin, and the etiology of black band disease.

Dis Aquat Organ 2009 Nov;87(1-2):79-90

Department of Biological Sciences, Florida International University, Miami, Florida 33199, USA.

View Article

Download full-text PDF

Source
http://www.int-res.com/abstracts/dao/v87/n1-2/p79-90/
Publisher Site
http://dx.doi.org/10.3354/dao02083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3518071PMC
November 2009

Sc(OTf)(3)-catalyzed condensation of 2-alkyl-N-tosylaziridine with aldehydes or ketones: an efficient synthesis of 5-alkyl-1,3-oxazolidines.

Chem Commun (Camb) 2009 Jul 26(26):3928-30. Epub 2009 May 26.

Department of Chemistry and the Institute for Catalysis in Energy Processes, Northwestern University, Evanston, IL 60208-3113, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/b902647aDOI Listing
July 2009

(Salen)chromium(III)/DMAP: an efficient catalyst system for the selective synthesis of 5-substituted oxazolidinones from carbon dioxide and aziridines.

Org Lett 2004 Jul;6(14):2301-4

Department of Chemistry and Institute for Environmental Catalysis, Northwestern University, 2145 Sheridan Rd., Evanston, Illinois 60208-3113, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ol049689tDOI Listing
July 2004