Aaron M Wenger

Aaron M Wenger

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Aaron M Wenger

Aaron M Wenger

Publications by authors named "Aaron M Wenger"

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24Publications

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High-coverage, long-read sequencing of Han Chinese trio reference samples.

Sci Data 2019 06 14;6(1):91. Epub 2019 Jun 14.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1 Gustave L Levy Pl, New York, NY, 10029, USA.

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http://dx.doi.org/10.1038/s41597-019-0098-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572837PMC
June 2019

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Nat Commun 2019 04 16;10(1):1784. Epub 2019 Apr 16.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://www.nature.com/articles/s41467-018-08148-z
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http://dx.doi.org/10.1038/s41467-018-08148-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467913PMC
April 2019

Phrank measures phenotype sets similarity to greatly improve Mendelian diagnostic disease prioritization.

Genet Med 2019 02 12;21(2):464-470. Epub 2018 Jul 12.

Department of Computer Science, Stanford University, Stanford, California, 94305, USA.

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http://dx.doi.org/10.1038/s41436-018-0072-yDOI Listing
February 2019

An MTF1 binding site disrupted by a homozygous variant in the promoter of ATP7B likely causes Wilson Disease.

Eur J Hum Genet 2018 12 7;26(12):1810-1818. Epub 2018 Aug 7.

Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41431-018-0221-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6244090PMC
December 2018

Variant Review with the Integrative Genomics Viewer.

Cancer Res 2017 11;77(21):e31-e34

School of Medicine, University of California San Diego, La Jolla, California.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-0337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678989PMC
November 2017

Systematic reanalysis of clinical exome data yields additional diagnoses: implications for providers.

Genet Med 2017 02 21;19(2):209-214. Epub 2016 Jul 21.

Department of Pediatrics, Stanford University, Stanford, California, USA.

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http://www.nature.com/doifinder/10.1038/gim.2016.88
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http://dx.doi.org/10.1038/gim.2016.88DOI Listing
February 2017

M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity.

Nat Genet 2016 12 24;48(12):1581-1586. Epub 2016 Oct 24.

Department of Computer Science, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/ng.3703DOI Listing
December 2016

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape.

Genome Res 2014 Sep 24;24(9):1504-16. Epub 2014 Jun 24.

Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA; Institute for Genome Sciences and Policy, Duke University, Durham, North Carolina 27708, USA; Department of Molecular Genetics and Microbiology, Duke University, Durham, North Carolina 27710, USA;

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http://dx.doi.org/10.1101/gr.165845.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4158762PMC
September 2014

Automated discovery of tissue-targeting enhancers and transcription factors from binding motif and gene function data.

PLoS Comput Biol 2014 Jan 30;10(1):e1003449. Epub 2014 Jan 30.

Department of Developmental Biology, Stanford University, Stanford, California, United States of America ; Department of Computer Science, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907286PMC
January 2014

Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.

Philos Trans R Soc Lond B Biol Sci 2013 Dec 11;368(1632):20130029. Epub 2013 Nov 11.

Department of Electrical Engineering, Stanford University, , Stanford, CA 94305, USA.

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http://dx.doi.org/10.1098/rstb.2013.0029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3826502PMC
December 2013

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.

Nucleic Acids Res 2013 Aug 27;41(15):e151. Epub 2013 Jun 27.

Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA, Department of Computer Science, Stanford University, Stanford, CA 94305, USA and Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/nar/gkt557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753653PMC
August 2013

The enhancer landscape during early neocortical development reveals patterns of dense regulation and co-option.

PLoS Genet 2013 Aug 29;9(8):e1003728. Epub 2013 Aug 29.

Department of Computer Science, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757057PMC
August 2013

PRISM offers a comprehensive genomic approach to transcription factor function prediction.

Genome Res 2013 May 4;23(5):889-904. Epub 2013 Feb 4.

Department of Computer Science, Stanford University, Stanford, California 94305, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.139071.112
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http://dx.doi.org/10.1101/gr.139071.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638144PMC
May 2013

Human developmental enhancers conserved between deuterostomes and protostomes.

PLoS Genet 2012 2;8(8):e1002852. Epub 2012 Aug 2.

Department of Genetics, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002852DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3410860PMC
December 2012